Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0331
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1250 - 25183375-25183815                                         87   2e-17
03_04_0027 + 16593133-16593573                                         86   2e-17
02_01_0563 + 4134954-4135388                                           86   2e-17
12_01_0426 - 3356350-3356745,3357604-3357921                           30   1.5  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.5  
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483...    28   7.7  
07_03_1737 + 29137654-29137842,29137999-29138061,29138196-291382...    28   7.7  

>07_03_1250 - 25183375-25183815
          Length = 146

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 38/77 (49%), Positives = 48/77 (62%)
 Frame = +2

Query: 23  RRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 202
           R+  K RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH  +
Sbjct: 6   RKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLR 65

Query: 203 NKNFCPVLNLDKLWTLV 253
           NK + P +N+++LW++V
Sbjct: 66  NKFYSPAVNVERLWSMV 82


>03_04_0027 + 16593133-16593573
          Length = 146

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 37/73 (50%), Positives = 45/73 (61%)
 Frame = +2

Query: 35  KLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNF 214
           K RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH   N+  
Sbjct: 10  KKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLSNRFH 69

Query: 215 CPVLNLDKLWTLV 253
           CP +N+++LW++V
Sbjct: 70  CPAVNVERLWSMV 82


>02_01_0563 + 4134954-4135388
          Length = 144

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 37/73 (50%), Positives = 45/73 (61%)
 Frame = +2

Query: 35  KLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNF 214
           K RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH   N+  
Sbjct: 10  KKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHRLSNRFH 69

Query: 215 CPVLNLDKLWTLV 253
           CP +N+++LW++V
Sbjct: 70  CPAVNVERLWSMV 82


>12_01_0426 - 3356350-3356745,3357604-3357921
          Length = 237

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 506 TNSPYSESYYNSLAVVLQRRDWEN 577
           TN   SESYY    V +Q RDW N
Sbjct: 198 TNVIPSESYYFKFGVYMQHRDWSN 221


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 531 ITIHWPSFYNVV-TGKTLALPNLIALQH 611
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_03_0135 -
           10547460-10547558,10547926-10548086,10548183-10548306,
           10548566-10548729,10549803-10549883,10549973-10550097,
           10550200-10550430,10550566-10550588,10551055-10551539,
           10551678-10552075,10552903-10552988,10553120-10553397,
           10553494-10553714,10553927-10554018,10554148-10554213,
           10555855-10556022
          Length = 933

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 264 EAEVCICSRWQ-GPRHQYCQSWILQVARQRQTPQTTCHSK 380
           E ++ +CSR   G  H YC   ++Q   + +    TCHS+
Sbjct: 288 EEKLAVCSRCNDGAEHIYCMRVMMQEVPKAKWLCETCHSE 327


>07_03_1737 +
           29137654-29137842,29137999-29138061,29138196-29138267,
           29138411-29138518,29138615-29138695,29138818-29138871,
           29138956-29139081,29139162-29139251,29139444-29139566,
           29139667-29139777,29139927-29140040,29140214-29140270,
           29140350-29140424,29140526-29140600
          Length = 445

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 128 DGAHHQHYHDLLDAYGAFRYDHVRD*HDLSASLVFFFEV 12
           D  ++ ++HD+ DA+G     HV++  +   +L+  FE+
Sbjct: 284 DDKYYPYFHDVYDAFGDSEEKHVKEAMEEQPTLMNAFEL 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,596,841
Number of Sequences: 37544
Number of extensions: 382257
Number of successful extensions: 991
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)