Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0331
         (670 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a pr...   108   2e-23
BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for IM...   108   2e-23
BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a ...   108   2e-23
AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a ...   108   2e-23
AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A ...   108   2e-23
BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a ...   105   1e-22

>U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  108 bits (259), Expect = 2e-23
 Identities = 45/81 (55%), Positives = 56/81 (69%)
 Frame = +2

Query: 11  PPQKRRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 190
           P + R+  KLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++
Sbjct: 2   PSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHY 61

Query: 191 HFRKNKNFCPVLNLDKLWTLV 253
           H ++N++FCP +NLDKLWTLV
Sbjct: 62  HLKRNQSFCPTVNLDKLWTLV 82



 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 28/88 (31%), Positives = 38/88 (43%)
 Frame = +1

Query: 187 FPL*KEQEFLSSFELR*ALDISLEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 366
           + L + Q F  +  L     +  EQTR+  A    G  P+I++V++           PKQ
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 367 PVIVXXXXXXXXXXXXXXDVGGACVLSA 450
           PVIV               VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148


>BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for
           IMAGE:3543815) protein.
          Length = 147

 Score =  108 bits (259), Expect = 2e-23
 Identities = 45/81 (55%), Positives = 56/81 (69%)
 Frame = +2

Query: 11  PPQKRRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 190
           P + R+  KLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++
Sbjct: 1   PSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHY 60

Query: 191 HFRKNKNFCPVLNLDKLWTLV 253
           H ++N++FCP +NLDKLWTLV
Sbjct: 61  HLKRNQSFCPTVNLDKLWTLV 81



 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 28/88 (31%), Positives = 38/88 (43%)
 Frame = +1

Query: 187 FPL*KEQEFLSSFELR*ALDISLEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 366
           + L + Q F  +  L     +  EQTR+  A    G  P+I++V++           PKQ
Sbjct: 60  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 119

Query: 367 PVIVXXXXXXXXXXXXXXDVGGACVLSA 450
           PVIV               VGGACVL A
Sbjct: 120 PVIVKAKFFSRRAEEKIKSVGGACVLVA 147


>BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  108 bits (259), Expect = 2e-23
 Identities = 45/81 (55%), Positives = 56/81 (69%)
 Frame = +2

Query: 11  PPQKRRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 190
           P + R+  KLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++
Sbjct: 2   PSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHY 61

Query: 191 HFRKNKNFCPVLNLDKLWTLV 253
           H ++N++FCP +NLDKLWTLV
Sbjct: 62  HLKRNQSFCPTVNLDKLWTLV 82



 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 28/88 (31%), Positives = 38/88 (43%)
 Frame = +1

Query: 187 FPL*KEQEFLSSFELR*ALDISLEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 366
           + L + Q F  +  L     +  EQTR+  A    G  P+I++V++           PKQ
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 367 PVIVXXXXXXXXXXXXXXDVGGACVLSA 450
           PVIV               VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148


>AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a
           protein.
          Length = 106

 Score =  108 bits (259), Expect = 2e-23
 Identities = 45/81 (55%), Positives = 56/81 (69%)
 Frame = +2

Query: 11  PPQKRRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 190
           P + R+  KLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++
Sbjct: 2   PSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHY 61

Query: 191 HFRKNKNFCPVLNLDKLWTLV 253
           H ++N++FCP +NLDKLWTLV
Sbjct: 62  HLKRNQSFCPTVNLDKLWTLV 82


>AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A
           protein.
          Length = 148

 Score =  108 bits (259), Expect = 2e-23
 Identities = 45/81 (55%), Positives = 56/81 (69%)
 Frame = +2

Query: 11  PPQKRRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 190
           P + R+  KLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++
Sbjct: 2   PSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHY 61

Query: 191 HFRKNKNFCPVLNLDKLWTLV 253
           H ++N++FCP +NLDKLWTLV
Sbjct: 62  HLKRNQSFCPTVNLDKLWTLV 82



 Score = 45.6 bits (103), Expect = 2e-04
 Identities = 28/88 (31%), Positives = 38/88 (43%)
 Frame = +1

Query: 187 FPL*KEQEFLSSFELR*ALDISLEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 366
           + L + Q F  +  L     +  EQTR+  A    G  P+I++V++           PKQ
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 367 PVIVXXXXXXXXXXXXXXDVGGACVLSA 450
           PVIV               VGGACVL A
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACVLVA 148


>BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  105 bits (252), Expect = 1e-22
 Identities = 44/81 (54%), Positives = 56/81 (69%)
 Frame = +2

Query: 11  PPQKRRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNF 190
           P + R+  KLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GM+++
Sbjct: 2   PSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHY 61

Query: 191 HFRKNKNFCPVLNLDKLWTLV 253
           + ++N++FCP +NLDKLWTLV
Sbjct: 62  NLKRNQSFCPTVNLDKLWTLV 82



 Score = 42.3 bits (95), Expect = 0.002
 Identities = 27/88 (30%), Positives = 37/88 (42%)
 Frame = +1

Query: 187 FPL*KEQEFLSSFELR*ALDISLEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 366
           + L + Q F  +  L     +  EQTR+  A    G  P+I++V++            KQ
Sbjct: 61  YNLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQ 120

Query: 367 PVIVXXXXXXXXXXXXXXDVGGACVLSA 450
           PVIV               VGGACVL A
Sbjct: 121 PVIVKAKLFSRRAEEKIKSVGGACVLVA 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,444,838
Number of Sequences: 237096
Number of extensions: 2055668
Number of successful extensions: 7516
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7510
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)