Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0331
(670 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical ... 102 3e-22
AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical ... 40 0.002
Z82285-9|CAB05303.1| 513|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z82264-13|CAB05168.1| 513|Caenorhabditis elegans Hypothetical p... 29 3.0
AL132952-25|CAB63388.1| 513|Caenorhabditis elegans Hypothetical... 29 3.0
AL132846-9|CAB63368.1| 513|Caenorhabditis elegans Hypothetical ... 29 3.0
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr... 28 5.2
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical... 28 5.2
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical... 28 5.2
U39472-5|AAK31393.1| 128|Caenorhabditis elegans Hypothetical pr... 28 6.9
AF067219-10|AAC17031.1| 753|Caenorhabditis elegans Hypothetical... 28 6.9
AF003133-2|AAB54136.1| 753|Caenorhabditis elegans Hypothetical ... 28 6.9
U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AC087079-7|AAK27870.1| 145|Caenorhabditis elegans Hypothetical
protein Y37E3.8a protein.
Length = 145
Score = 102 bits (244), Expect = 3e-22
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +2
Query: 23 RRLGKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 202
R+ KLRGHVS NAGG+HHHRIN DKYHPGYFGK+GMR FH K
Sbjct: 6 RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVFHLNK 65
Query: 203 NKNFCPVLNLDKLWTLV 253
N+++CP +N+++LW+LV
Sbjct: 66 NQHYCPTVNVERLWSLV 82
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/88 (27%), Positives = 33/88 (37%)
Frame = +1
Query: 187 FPL*KEQEFLSSFELR*ALDISLEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 366
F L K Q + + + + ++ R K A GK PVI+ K P+
Sbjct: 61 FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 117
Query: 367 PVIVXXXXXXXXXXXXXXDVGGACVLSA 450
P+IV GGACVL A
Sbjct: 118 PLIVKARFFSHEAEQKIKKAGGACVLVA 145
>AC087079-8|AAK27871.1| 88|Caenorhabditis elegans Hypothetical
protein Y37E3.8b protein.
Length = 88
Score = 39.9 bits (89), Expect = 0.002
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +2
Query: 179 MRNFHFRKNKNFCPVLNLDKLWTLV 253
MR FH KN+++CP +N+++LW+LV
Sbjct: 1 MRVFHLNKNQHYCPTVNVERLWSLV 25
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/88 (27%), Positives = 33/88 (37%)
Frame = +1
Query: 187 FPL*KEQEFLSSFELR*ALDISLEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQ 366
F L K Q + + + + ++ R K A GK PVI+ K P+
Sbjct: 4 FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 60
Query: 367 PVIVXXXXXXXXXXXXXXDVGGACVLSA 450
P+IV GGACVL A
Sbjct: 61 PLIVKARFFSHEAEQKIKKAGGACVLVA 88
>Z82285-9|CAB05303.1| 513|Caenorhabditis elegans Hypothetical
protein T28F3.9 protein.
Length = 513
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 506 TNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAH 613
TN +E YY + V+ +D +NPG LN +H
Sbjct: 470 TNIKMNEKYYEEMVTVIYHKDHKNPGY-HLNCTPSH 504
>Z82264-13|CAB05168.1| 513|Caenorhabditis elegans Hypothetical
protein T28F3.9 protein.
Length = 513
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 506 TNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAH 613
TN +E YY + V+ +D +NPG LN +H
Sbjct: 470 TNIKMNEKYYEEMVTVIYHKDHKNPGY-HLNCTPSH 504
>AL132952-25|CAB63388.1| 513|Caenorhabditis elegans Hypothetical
protein Y51H4A.25a protein.
Length = 513
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 506 TNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAH 613
TN +E YY + V+ +D +NPG LN +H
Sbjct: 470 TNIKLNEKYYEEMVTVIYHKDHKNPGY-HLNCTPSH 504
>AL132846-9|CAB63368.1| 513|Caenorhabditis elegans Hypothetical
protein Y51H4A.25a protein.
Length = 513
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 506 TNSPYSESYYNSLAVVLQRRDWENPGVTQLNRLAAH 613
TN +E YY + V+ +D +NPG LN +H
Sbjct: 470 TNIKLNEKYYEEMVTVIYHKDHKNPGY-HLNCTPSH 504
>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 321 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 425
SW+ +++ Q P+T C ++K+ REE C
Sbjct: 5 SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38
>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 321 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 425
SW+ +++ Q P+T C ++K+ REE C
Sbjct: 5 SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38
>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 321 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 425
SW+ +++ Q P+T C ++K+ REE C
Sbjct: 5 SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38
>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 321 SWILQVARQRQTPQTTCHSKSKVLLKISREENQGC 425
SW+ +++ Q P+T C ++K+ REE C
Sbjct: 5 SWV-RISNATQDPETRCSVAQDQIVKVVREEGDWC 38
>U39472-5|AAK31393.1| 128|Caenorhabditis elegans Hypothetical
protein B0304.4 protein.
Length = 128
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 324 SFDNIDDGDLA-IWSRCILQPRLFKTNVQSLSKF 226
S N+ G L IWSRCI QP F + S+S+F
Sbjct: 14 SSGNVQKGKLLNIWSRCIAQPSSFLGS--SISRF 45
>AF067219-10|AAC17031.1| 753|Caenorhabditis elegans Hypothetical
protein R12E2.10 protein.
Length = 753
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 267 AEVCICSRWQGPRHQYCQSWILQVARQRQ 353
AE+ ICS +GP ++Y +Q RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641
>AF003133-2|AAB54136.1| 753|Caenorhabditis elegans Hypothetical
protein T21E3.1 protein.
Length = 753
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 267 AEVCICSRWQGPRHQYCQSWILQVARQRQ 353
AE+ ICS +GP ++Y +Q RQR+
Sbjct: 613 AEIAICSLLRGPTYKYPVQRAVQFLRQRR 641
>U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical
protein F37A4.3 protein.
Length = 229
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 179 MRNFHFRKNKNFCPVLNLDKLWTLVLNRRG*SMH 280
+R+FH N N+C ++ + NRRG ++H
Sbjct: 140 LRDFHADVNFNYCIIMRTQQNSPFFSNRRGNALH 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,930,703
Number of Sequences: 27780
Number of extensions: 303543
Number of successful extensions: 727
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -