Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0331
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.65 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   4.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   4.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   4.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   4.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   4.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   4.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   4.6  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 488 LEGGPGTNSPYSESYYNSLAVVL 556
           L+G PG NSPY+ +    +A+VL
Sbjct: 26  LQGFPGKNSPYTVTQAILIALVL 48


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 258 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQTPQT 365
           +DEAE    S+  G    + QS I +VAR+ +T  T
Sbjct: 272 SDEAEPSSTSKKSGIVRSHQQSCINRVARETKTAGT 307


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 303 RHQYCQSWILQVARQRQTPQTTCHSKS 383
           RH   ++W+    R + TPQ+   S++
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQT 267


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 586 NARVFPVTTL*NDGQ*IVIRLTIGRIGTGPPL 491
           N + F VT L NDG    + +   +IG G PL
Sbjct: 74  NGKTF-VTILRNDGVPSSLNVISNKIGNGGPL 104


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 258 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 353
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 258 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 353
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 258 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 353
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 258 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 353
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 258 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 353
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 258 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 353
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 258 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 353
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 258 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 353
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,635
Number of Sequences: 438
Number of extensions: 3659
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)