Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0331
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...    97   9e-21
At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...    97   9e-21
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    46   2e-05
At4g29090.1 68417.m04163 reverse transcriptase, putative / RNA-d...    30   1.2  
At1g27020.1 68414.m03294 expressed protein                             29   2.1  
At2g16100.1 68415.m01846 hypothetical protein                          29   3.7  

>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 43/73 (58%), Positives = 48/73 (65%)
 Frame = +2

Query: 35  KLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNF 214
           K RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH  +NK F
Sbjct: 10  KKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFF 69

Query: 215 CPVLNLDKLWTLV 253
           CP++NLDKLW+LV
Sbjct: 70  CPIVNLDKLWSLV 82


>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 43/73 (58%), Positives = 48/73 (65%)
 Frame = +2

Query: 35  KLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNF 214
           K RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR FH  +NK F
Sbjct: 10  KKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFF 69

Query: 215 CPVLNLDKLWTLV 253
           CP++NLDKLW+LV
Sbjct: 70  CPIVNLDKLWSLV 82


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +2

Query: 125 HHRINMDKYHPGYFGK--LGMRNFHFRKNKNFCPVLNLDKLWTLVLNR 262
           H R    +  PG  G   +GMR FH  +NK +C ++NLDKLW++VL +
Sbjct: 19  HGRFGKHRKLPGSRGNAGVGMRYFHKLRNKFYCQIVNLDKLWSMVLGK 66


>At4g29090.1 68417.m04163 reverse transcriptase, putative /
           RNA-dependent DNA polymerase, putative similar to
           reverse transcriptase [Arabidopsis thaliana] GI:976278;
           contains Pfam profile PF00075: RNase H
          Length = 575

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 124 PSQNQHGQVPSWILWQTWYEKFPL-*KEQEFLSSFELR*ALDISLEQTRLKYASAPDGKV 300
           P   +  Q+  W+LW+ W  +  L  + +EF +   LR A D  LE+ R++  +   G  
Sbjct: 351 PQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAED-DLEEWRIRTEAESCGTK 409

Query: 301 PVIN 312
           P +N
Sbjct: 410 PQVN 413


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 569 WENPGVTQLNRLAAHSPFASW 631
           WE P  T  N+LA  S FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 121 APSQNQHGQVPSWILWQTW 177
           +P  +Q  Q+P WILW+ W
Sbjct: 20  SPRTSQFHQLPLWILWRIW 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,235,956
Number of Sequences: 28952
Number of extensions: 286170
Number of successful extensions: 650
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)