Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0330
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 28 0.62
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb... 28 0.62
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 27 1.1
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 1.4
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 1.9
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 26 2.5
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 25 5.8
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 5.8
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 25 5.8
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 25 5.8
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 7.7
SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces pomb... 25 7.7
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 25 7.7
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 28.3 bits (60), Expect = 0.62
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +3
Query: 213 CIFSYVKIEIIFFKTM*SLPSSAFSTSYSI*KWICIFSNFNFIC 344
C++SYV + F ++ S+P+ A +T + I + + + F+C
Sbjct: 138 CVYSYVALCSTFASSVFSVPAEAITTIFHISLTVSLLTMTVFLC 181
>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 28.3 bits (60), Expect = 0.62
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 254 LKKYDFDFDVRENAHFDLSNLFNGNKELSKIIHSFLNENWKQVV 123
LKKY+FD+DV + K+L+ + F ++ K ++
Sbjct: 27 LKKYNFDYDVAYTKWIQQKSREEAEKQLNNVFSQFSSKEDKDLI 70
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 280 LFPHHIQYKSGSAYSLILTSFVHH-QRSAKRVCYRQLYN 393
+FP+HIQ+ SG ++ + L + + RV + ++YN
Sbjct: 591 IFPNHIQHSSGISFFVTLAEIMRRCMWNILRVEHEEIYN 629
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 27.1 bits (57), Expect = 1.4
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 1 HYNSYFYKIAISSSEFFSKNIFMFLKNFFAVASI 102
H N YK++ SS F++N++ ++ F + +
Sbjct: 105 HKNLLLYKLSSSSGSVFTENLYSTIQEFLSAQKV 138
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 328 LENMQIHFYIEYDVEKAEDGKDHIVLKNMISILT 227
LE H + Y V+ + KD+I + N++S+LT
Sbjct: 83 LEGYHQHRVLLYFVDSIHEKKDYIEIINVLSVLT 116
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 26.2 bits (55), Expect = 2.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 224 RENAHFDLSNLFNGNKELSKIIHSFLNENWKQVVTEFGR 108
R + L L NG+K + ++ N W+ VV EF +
Sbjct: 57 RMASEIQLHKLCNGHKNIIHFYNTAENPQWRWVVLEFAQ 95
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 427 VIYHLDSSIKGHYTAGGSILVWP 359
V+Y DS+ +GHY ++WP
Sbjct: 224 VVYTSDSNFEGHYNHYCRKILWP 246
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 111 KTNYGRYSKEILQEHKYILRK--KFT*RYSDFVE 16
K YG++S E+L E K++ K K T + D +E
Sbjct: 548 KEIYGKHSVEVLTEDKHLQVKQTKLTQKLEDLIE 581
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 349 DAQMKLKLENMQIHFYIEYDVEKAEDGKDHIVLKNMISILT 227
++ K+++EN + Y YD+ K + D I K + ILT
Sbjct: 32 NSNAKVQIENRGGNSYEIYDMNKITESSDPIRNKEEVLILT 72
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 5.8
Identities = 10/45 (22%), Positives = 20/45 (44%)
Frame = +1
Query: 217 FSLTSKSKSYFLRQCDLCHPLLFPHHIQYKSGSAYSLILTSFVHH 351
+ L +++ C L H L +++ Y G Y + ++ V H
Sbjct: 269 YQLVARNMRILFHVCHLVHADLSEYNLLYHKGKVYFIDVSQSVEH 313
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 260 HCLKKYDFDFDVRENAHFDLS 198
H LK +FDFD +A F+ S
Sbjct: 691 HFLKSMNFDFDASSSAAFNAS 711
>SPAC57A10.10c |sla1||La protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 298
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 466 DDVKWDTEKRRFDVIYHLDSSIKGHYTAGG 377
D K+ +++RRFD +D G Y+ G
Sbjct: 248 DPPKFSSKRRRFDAFKEMDRQRPGKYSNRG 277
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 262 DLCHPLLFPHHIQYKSGSAYSLILT 336
D+ H L PH YKS +S++L+
Sbjct: 326 DVVHNLDVPHDKSYKSNYLFSVVLS 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,266
Number of Sequences: 5004
Number of extensions: 40885
Number of successful extensions: 123
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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