Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0330
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)                 30   1.1  
SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)                  30   1.1  
SB_8682| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_39669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_38511| Best HMM Match : Ras (HMM E-Value=1.2e-22)                   29   1.5  
SB_22068| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_798| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   1.5  
SB_53800| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_2851| Best HMM Match : RVT_1 (HMM E-Value=3.50325e-43)              29   1.5  
SB_2705| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.5  
SB_56853| Best HMM Match : BTB (HMM E-Value=1.1e-16)                   29   2.6  
SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)                  27   5.9  
SB_56989| Best HMM Match : DUF1103 (HMM E-Value=2.4)                   27   7.8  
SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34)          27   7.8  

>SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 SEFCYYL-FPILIEETVNYFTQFLVTIEKV*QIEMCI 218
           S FCY++ F  +  + ++ F+ F+VTIE+   +  C+
Sbjct: 265 SHFCYFVGFVFIFGQGISAFSSFIVTIERYLAVVFCL 301


>SB_33819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 SEFCYYL-FPILIEETVNYFTQFLVTIEKV*QIEMCI 218
           S FCY++ F  +  + ++ F+ F+VTIE+   +  C+
Sbjct: 382 SHFCYFVGFVSIFGQGISAFSSFIVTIERYLAVVFCL 418


>SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)
          Length = 646

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 SEFCYYL-FPILIEETVNYFTQFLVTIEKV*QIEMCI 218
           S FCY++ F  +  + ++ F+ F+VTIE+   +  C+
Sbjct: 303 SHFCYFVGFVSIFGQGISAFSSFIVTIERYLAVVFCL 339



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 SEFCYYL-FPILIEETVNYFTQFLVTIEKV*QIEMCI 218
           S FCY++ F  +  + ++ F+ F+VTIE+   +  C+
Sbjct: 425 SHFCYFVGFVSIFGQGISAFSSFIVTIERYLAVVFCL 461


>SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)
          Length = 419

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 111 SEFCYYL-FPILIEETVNYFTQFLVTIEKV*QIEMCI 218
           S FCY++ F  +  + ++ F+ F+VTIE+   +  C+
Sbjct: 184 SHFCYFVGFVSIFGQGISAFSSFIVTIERYLAVVFCL 220


>SB_8682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 150  PQ*ELETSSNRIRKTNYGRYSKEILQEH--KYILRKKFT 40
            P  E+E +  R  KTN  R  KE+ +E   KYI++K +T
Sbjct: 1043 PGNEMELNFTRFVKTNLSRVMKELSEERLKKYIVKKWYT 1081


>SB_39669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 566

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = -2

Query: 245 YDFDFDVRENAHFDLSNLFNGNKELSKIIHSFLNENWKQVVTEFGRPIMD 96
           Y  +F+       +++ L + N +  +++ +F + N+KQ+VT+  RPI +
Sbjct: 7   YLLNFETIILGDLNINYLASSNFKKHRLVRAFTSMNFKQLVTQVTRPISE 56


>SB_38511| Best HMM Match : Ras (HMM E-Value=1.2e-22)
          Length = 159

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 230 DVRENAHFDLSNLFNGNKELSKIIHSFLNENWKQVVTEFGRPIMDATA 87
           ++R++A  DLS +  GNK   K +    N   KQ   E G   M+ +A
Sbjct: 40  ELRQHASDDLSIILIGNKSDLKHLRMIENRRGKQFAAEHGMLFMETSA 87


>SB_22068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = -2

Query: 245 YDFDFDVRENAHFDLSNLFNGNKELSKIIHSFLNENWKQVVTEFGRPIMD 96
           Y  +F+       +++ L + N +  +++ +F + N+KQ+VT+  RPI +
Sbjct: 359 YLLNFETIILGDLNINYLASSNFKKHRLVRAFTSMNFKQLVTQVTRPISE 408


>SB_798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = -2

Query: 245 YDFDFDVRENAHFDLSNLFNGNKELSKIIHSFLNENWKQVVTEFGRPIMD 96
           Y  +F+       +++ L + N +  +++ +F + N+KQ+VT+  RPI +
Sbjct: 296 YLLNFETIILGDLNINYLASSNFKKHRLVRAFTSMNFKQLVTQVTRPISE 345


>SB_53800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 666

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = -2

Query: 245 YDFDFDVRENAHFDLSNLFNGNKELSKIIHSFLNENWKQVVTEFGRPIMD 96
           Y  +F+       +++ L + N +  +++ +F + N+KQ+VT+  RPI +
Sbjct: 124 YLLNFETIILGDLNINYLASSNFKKHRLVRAFTSMNFKQLVTQVTRPISE 173


>SB_2851| Best HMM Match : RVT_1 (HMM E-Value=3.50325e-43)
          Length = 890

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = -2

Query: 245 YDFDFDVRENAHFDLSNLFNGNKELSKIIHSFLNENWKQVVTEFGRPIMD 96
           Y  +F+       +++ L + N +  +++ +F + N+KQ+VT+  RPI +
Sbjct: 63  YLLNFETIILGDLNINYLASSNFKKHRLVRAFTSMNFKQLVTQVTRPISE 112


>SB_2705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = -2

Query: 245 YDFDFDVRENAHFDLSNLFNGNKELSKIIHSFLNENWKQVVTEFGRPIMD 96
           Y  +F+       +++ L + N +  +++ +F + N+KQ+VT+  RPI +
Sbjct: 14  YLLNFETIILGDLNINYLASSNFKKHRLVRAFTSMNFKQLVTQVTRPISE 63


>SB_56853| Best HMM Match : BTB (HMM E-Value=1.1e-16)
          Length = 605

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 290 CGKSRGWQRSHCLKKYDFDFDVRENAHFDLSNLFNG 183
           CGKSR  + +  ++K DF+    EN HF   N+ +G
Sbjct: 257 CGKSRLVRGTQSIEKVDFELKF-ENEHFSEENVKSG 291


>SB_1945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
 Frame = -3

Query: 418 HLDSSIKGHYTAGGSILVWPIAGDA-------QMKLKLENMQIHFYIEYDVEKAE 275
           H+D+    H    GS+ VW I  D        QMK  LE    H  IE +V+  E
Sbjct: 602 HIDAFPDNHERLQGSVDVWWIVHDGELEDNSIQMKKDLETFMYHLRIEAEVQVIE 656


>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
          Length = 1498

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -3

Query: 427 VIYHLDSSIKGHYTAGGSILVWPIAGDAQMKLKLENMQI 311
           +I H    I G  ++GG++ +W + G A+M+L  EN ++
Sbjct: 675 LISHRGQLIAG--SSGGNLRLWSVVGVAEMRLPGENNRL 711


>SB_56989| Best HMM Match : DUF1103 (HMM E-Value=2.4)
          Length = 835

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 254 LKKYDFDFDVRENAHFDLSNLFNGNKELS 168
           +K+YD D   +   + D +NL+ G++ELS
Sbjct: 92  MKEYDPDLPTKYITYLDANNLWMGDQELS 120


>SB_55600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 971

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 254 LKKYDFDFDVRENAHFDLSNLFNGNKELS 168
           +K+YD D   +   + D +NL+ G++ELS
Sbjct: 828 MKEYDPDLPTKYITYLDANNLWMGDQELS 856


>SB_28889| Best HMM Match : ANF_receptor (HMM E-Value=1.1e-34)
          Length = 933

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 306 KWICIFSNFNFICASPAIGQTSML 377
           +W+C  ++F   C  P  GQT  L
Sbjct: 568 RWVCKVADFGLTCLKPTRGQTLKL 591


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,708,366
Number of Sequences: 59808
Number of extensions: 262710
Number of successful extensions: 544
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)