Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0330
(471 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025469-4|AAG00032.1| 270|Caenorhabditis elegans Hypothetical ... 30 0.96
AF077546-8|AAC26320.2| 649|Caenorhabditis elegans Hypothetical ... 29 2.2
Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 27 5.1
U13644-5|AAB52681.1| 451|Caenorhabditis elegans Hypothetical pr... 27 5.1
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 27 5.1
Z81585-4|CAB04687.1| 345|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z49908-4|CAA90095.1| 535|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z93383-2|CAB07624.1| 253|Caenorhabditis elegans Hypothetical pr... 27 9.0
AL110487-7|CAB54431.1| 581|Caenorhabditis elegans Hypothetical ... 27 9.0
>AF025469-4|AAG00032.1| 270|Caenorhabditis elegans Hypothetical
protein W09B6.5 protein.
Length = 270
Score = 29.9 bits (64), Expect = 0.96
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 269 QRSHCLKKYDFDFDVRENAHFDLSNLFNGNKELSKIIHSF 150
++ +CLK + F + +N +F + N F N+ L +I++F
Sbjct: 218 RKKNCLKIFQKKFFLAKNFYFQIFNFFIANQYLITLIYTF 257
>AF077546-8|AAC26320.2| 649|Caenorhabditis elegans Hypothetical
protein T08E11.1 protein.
Length = 649
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 233 FDVRENAHFDLSNLFNGNKELSKIIHSFLNENWKQVVTEFGR 108
F REN H DL F + +LSK+ ++F E+ VTE+ +
Sbjct: 23 FHCREN-HVDLVLDFENHFKLSKVTYTFKEEDTLVEVTEYNK 63
>Z81481-3|CAB03949.1| 1496|Caenorhabditis elegans Hypothetical
protein C38D9.3 protein.
Length = 1496
Score = 27.9 bits (59), Expect = 3.9
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 220 SLTSKSKSYFLRQCDLCHPLLFPHHIQYKSGSAYSLILTSFVHHQRSA-KRVCYRQLYNV 396
+L+SK +R+ LC L PHH K S S HH + K+ YR N
Sbjct: 715 TLSSKQFREVIREKRLCANCLNPHHDIKKCRSYRSCAYCMGKHHSGACPKKEYYRDTDNY 774
Query: 397 P 399
P
Sbjct: 775 P 775
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 27.5 bits (58), Expect = 5.1
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 220 SLTSKSKSYFLRQCDLCHPLLFPHHIQYKSGSAYSLILTSFVHHQRSA-KRVCYRQLYNV 396
+L+SK +R+ LC L PHH K S S HH + K+ YR N
Sbjct: 676 TLSSKQFREVIREKKLCANCLNPHHDIEKCRSYRSCAYCMGKHHSGACPKKEYYRDPDNY 735
Query: 397 P 399
P
Sbjct: 736 P 736
>U13644-5|AAB52681.1| 451|Caenorhabditis elegans Hypothetical
protein F56D2.2 protein.
Length = 451
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 236 DFDVRENAHFDLSNLFNGNKELSKIIHSFLNENW 135
D D E A ++ F G K + +++ FLNE W
Sbjct: 300 DGDEAEKA--EMCRQFGGEKRVEELVERFLNEEW 331
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 27.5 bits (58), Expect = 5.1
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 220 SLTSKSKSYFLRQCDLCHPLLFPHHIQYKSGSAYSLILTSFVHHQRSA-KRVCYRQLYNV 396
+L+SK +R+ LC L PHH K S S HH + K+ YR N
Sbjct: 676 TLSSKQFREVIREKKLCANCLNPHHDIEKCRSYRSCAYCMGKHHSGACPKKEYYRDPDNY 735
Query: 397 P 399
P
Sbjct: 736 P 736
>Z81585-4|CAB04687.1| 345|Caenorhabditis elegans Hypothetical
protein T05E12.4 protein.
Length = 345
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 295 YDVEKAEDGKDHIVLKNMISILT*EKMHISICQTF 191
Y+ K++ H VL + S +T ++HISIC F
Sbjct: 176 YNNSKSKPEWQHYVLVDCFSCVTSLQIHISICSRF 210
>Z49908-4|CAA90095.1| 535|Caenorhabditis elegans Hypothetical
protein C07E3.4 protein.
Length = 535
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 150 ETVNYFTQFLVTIEKV*QIEMCIFSYVKIEIIFF 251
E VNY ++T++ V + C+ +YV + +++F
Sbjct: 260 EDVNYINASVITLKDVSRRMACVPAYVHLVVLYF 293
>Z93383-2|CAB07624.1| 253|Caenorhabditis elegans Hypothetical
protein F54B8.2 protein.
Length = 253
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 1 HYNSYFYKIAISSSEFFSKNIFMF 72
+Y +FY +A+S+S+F K F++
Sbjct: 61 NYRDWFYLVAVSTSDFLRKFPFVY 84
>AL110487-7|CAB54431.1| 581|Caenorhabditis elegans Hypothetical
protein Y39E4B.10 protein.
Length = 581
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 4 YNSYFYKIAISSSEFFSKNIFMFLKNFFAVASIIGLPNSVTTCFQF 141
+N ++ I + +FF KN+F FL SI T FQF
Sbjct: 324 FNFFYISKKILTKKFFKKNLFFFLIFNNLEKSIFSNFKKSNTFFQF 369
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,751,038
Number of Sequences: 27780
Number of extensions: 220850
Number of successful extensions: 611
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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