Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0330
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    31   0.005
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.54 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.7  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 31.5 bits (68), Expect = 0.005
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 254 LKKYDFDFDVRENAHFDLSNLFNGNKELSKIIHSFLNEN 138
           +KK+   F+  +       NLF+GNKEL + ++ F+NEN
Sbjct: 176 IKKHAVKFNPAK-VKLRFENLFDGNKELGEQMNRFINEN 213


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.54
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -2

Query: 239 FDFDVRENAH--FDLSNLFNGNKELSKIIHSFLNENWKQVVTEF 114
           + +DVR+     F   N  N     SKI  + L +NW  V T +
Sbjct: 404 YKYDVRDGCRTPFQWDNSINAG--FSKIAENLLEKNWLPVHTSY 445


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 10/38 (26%), Positives = 15/38 (39%)
 Frame = +1

Query: 1   HYNSYFYKIAISSSEFFSKNIFMFLKNFFAVASIIGLP 114
           HY    YK  +    F SK          + +S++G P
Sbjct: 254 HYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSP 291


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 209 FDLSNLFNGNKELSKIIHSFLNENW 135
           +++SN F GN  L  +++    E W
Sbjct: 271 YEISNAFRGNNNLKWLVN--WGEQW 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,401
Number of Sequences: 438
Number of extensions: 2671
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)