Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0330
         (471 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54160.1 68416.m05987 syntaxin-related family protein contain...    29   1.2  
At2g28890.1 68415.m03511 protein phosphatase 2C family protein /...    29   2.1  
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam...    28   2.8  
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam...    28   2.8  
At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost ...    28   2.8  
At4g37580.1 68417.m05319 N-acetyltransferase, putative / hookles...    27   6.4  
At3g24210.1 68416.m03038 ankyrin repeat family protein contains ...    27   6.4  
At5g11510.1 68418.m01343 myb family transcription factor (MYB3R4...    27   8.5  

>At3g54160.1 68416.m05987 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to At1g48390, At1g47920
           (syntaxin SYP81), At5g41830, At3g44180,At1g56610,
           At3g58890, At1g48390,  At3g59270 [Arabidopsis thaliana]
          Length = 434

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 48  FFEEYIYVLEEFLCCSVHNWSSEFCYYLFPILIEETVNYFT 170
           FFEE + V E     S+     +FC+ + PIL+E++ N  T
Sbjct: 288 FFEEAVPVFENLFHLSLST-EVDFCWNVLPILLEKSPNLKT 327


>At2g28890.1 68415.m03511 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 654

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +1

Query: 199 DRSKCAFSLTSKSKSYFLRQCDLCHPLLFPHHIQYKSGSAYSLILTSFVHHQRSAK 366
           +R K +  +T    + FL+Q    + LL    I YK  S Y   L S  HH+  +K
Sbjct: 509 ERVKGSLKVTRAFGAGFLKQPKWNNALLEMFQIDYKGTSPYINCLPSLYHHRLGSK 564


>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 482

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 212 HFDLSNLFNGNK-ELSKIIHSFLNENWKQ 129
           H+  ++ F GN  E++KIIH FL    KQ
Sbjct: 2   HYSQTSSFGGNHTEIAKIIHKFLQPRVKQ 30


>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 743

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 212 HFDLSNLFNGNK-ELSKIIHSFLNENWKQ 129
           H+  ++ F GN  E++KIIH FL    KQ
Sbjct: 263 HYSQTSSFGGNHTEIAKIIHKFLQPRVKQ 291


>At2g04160.1 68415.m00400 subtilisin-like protease (AIR3) almost
           identical to subtilisin-like protease AIR3 GI:4218991
           from [Arabidopsis thaliana], missing 200 aa at
           N-terminus
          Length = 772

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 312 ICIFSNFNFICASPAIGQTSMLPPAV*CPLIEESR 416
           I +FS  NF C+SP I   ++  P++  P +  S+
Sbjct: 655 ISVFSGNNFTCSSPKISLVNLNYPSITVPNLTSSK 689


>At4g37580.1 68417.m05319 N-acetyltransferase, putative / hookless1
           (HLS1) contains Pfam profile PF00583: acetyltransferase,
           GNAT family; identical to cDNA putative
           N-acetyltransferase hookless1 (HLS1) GI:1277089
          Length = 403

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 19  YKIAISSSEFFSKNIFMFLKNFFAVASIIGLP 114
           Y+I  S++EFF ++I   L N  ++ + + +P
Sbjct: 196 YRIRFSTTEFFPRDIDSVLNNKLSLGTFVAVP 227


>At3g24210.1 68416.m03038 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 607

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 328 LENMQIHFYIEYDVEKAEDGKDHIVLKNMISIL 230
           +EN+ +  YI   V KA   KD++ L+ ++S L
Sbjct: 1   MENVDVSKYIHSSVHKAVASKDYVGLRAILSSL 33


>At5g11510.1 68418.m01343 myb family transcription factor (MYB3R4)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 961

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 173 LSKIIHSFLNENWKQVVTEF 114
           L K +HSF  +NWK++   F
Sbjct: 40  LRKAVHSFKGKNWKKIAEYF 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,854,016
Number of Sequences: 28952
Number of extensions: 194068
Number of successful extensions: 477
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)