Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0326
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1117 - 24096425-24097853,24097894-24098336                       29   3.3  
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300...    29   4.3  
12_02_0668 + 21688853-21688933,21689043-21689081,21689597-216897...    28   5.7  
07_01_0871 - 7230228-7230338,7231055-7231348,7231972-7232148,723...    28   5.7  
04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203     28   5.7  

>07_03_1117 - 24096425-24097853,24097894-24098336
          Length = 623

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -3

Query: 499 GYFVQIEQLLVNAGYSYEDTLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPS 329
           G F ++    ++ G S     +  C T   I   + S  + SH  P LP+ T A+ S
Sbjct: 566 GTFEELMDYAISRGASINQYKVPRCVTFPPIVELLDSRVVSSHFSPALPHWTPARRS 622


>06_03_0742 +
           24027506-24027721,24028835-24029004,24029893-24030052,
           24030162-24030455,24031490-24031717,24031827-24032006,
           24032079-24032238,24032591-24032617,24033426-24033613,
           24034269-24034532,24035123-24035218,24035311-24035399,
           24035473-24035620,24035842-24036051,24036141-24036440,
           24037906-24038248,24038747-24038952,24039071-24039273,
           24040021-24040117,24040148-24040222,24040328-24040602,
           24041116-24041256,24041469-24042339,24042481-24042520,
           24042605-24043050
          Length = 1808

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 110 FLKNFLASNNFFRKTIKDILNVMKH 184
           FLKN L + N FR +I   L +M+H
Sbjct: 396 FLKNLLVAPNRFRPSISSSLGIMEH 420


>12_02_0668 +
           21688853-21688933,21689043-21689081,21689597-21689794,
           21690288-21690341,21690772-21690825,21691544-21691597,
           21691694-21691765,21691860-21691949,21692132-21692188,
           21692449-21692514
          Length = 254

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 367 EPVLPYGTKAKPSVVRKPSVTSVPEKL 287
           EP +P G +A PS+ RK  +  V EK+
Sbjct: 13  EPAVPAGEEAAPSLERKEELLPVEEKI 39


>07_01_0871 -
           7230228-7230338,7231055-7231348,7231972-7232148,
           7232513-7232551,7232734-7234057,7238145-7238189,
           7238456-7238498,7238680-7238716,7239035-7239325,
           7239634-7239685,7239690-7239773,7240064-7240137,
           7240703-7241641
          Length = 1169

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 430 ACPTPEQISVFISSASLISHSEPVLPYGTKAK 335
           A P    ++VF+     +SHS P+L Y T+A+
Sbjct: 272 AMPNVHTLAVFVMVYGYVSHSLPLLQYFTEAR 303


>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
          Length = 357

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 454 SSQRSPEVVLFGRSSRQRFPNRFEQDKFSLL 546
           S++RS E   F  SSR R+P   +QD F+++
Sbjct: 242 SNERSIEFYSFWYSSRLRYPGLHDQDVFNVI 272


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,182,059
Number of Sequences: 37544
Number of extensions: 257135
Number of successful extensions: 663
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)