Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0326
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)                 38   0.007
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)
          Length = 530

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 22/80 (27%), Positives = 41/80 (51%)
 Frame = -3

Query: 631 RVVVKEVQKRIKAHLAPLQRSMQLYFSQ*GD*IYLVQTD*ENVVGYFVQIEQLLVNAGYS 452
           R VV E    +K+ L    +SM L+ +       L +     V  Y+ Q+ +L+    Y+
Sbjct: 450 RKVVSETYMMLKSKLPSTLQSMALFLANKDTEYILFKPVKTKVQEYYKQMNELIAET-YT 508

Query: 451 YEDTLIVACPTPEQISVFIS 392
            ED+ I+ CP+ +Q+S+ ++
Sbjct: 509 EEDSHIIGCPSIQQVSLLLA 528



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/15 (73%), Positives = 15/15 (100%)
 Frame = -1

Query: 555 LANKETEFILFKPIR 511
           LANK+TE+ILFKP++
Sbjct: 475 LANKDTEYILFKPVK 489


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 346 TKAKPSVVRKPSVTSVPEKLEEKATA 269
           T+ +PS  RKPS  S PE+ +++A A
Sbjct: 733 TRGRPSTGRKPSAKSCPEQDKKQAPA 758


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,778,559
Number of Sequences: 59808
Number of extensions: 306723
Number of successful extensions: 689
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)