Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0326
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024830-5|AAK68534.3|  444|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF026204-5|AAB71249.1|  239|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z81489-14|CAN86572.1|  420|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z81087-2|CAN86636.1|  420|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC024830-5|AAK68534.3|  444|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.4 protein.
          Length = 444

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 535 IYLVQTD*ENVVGYFVQIEQLLVNAGYSYEDTLIVACPTPEQISVFISSASL 380
           IYL  T+    + Y   +   L+   +    T++ ACP P  I   I++A L
Sbjct: 363 IYLADTEHSGPLRYVNHVIDYLMKKEHKPRTTIVTACPGPTPIQRQITTAML 414


>AF026204-5|AAB71249.1|  239|Caenorhabditis elegans Hypothetical
           protein C30E1.4 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 434 NQSILVRVASVHQKLFYLDEVADNVFLIGLNKINS 538
           +Q I + VAS  Q +F L   +   FLIG NK NS
Sbjct: 104 HQPIHLSVASYSQSVFSLKVESVENFLIGSNKFNS 138


>Z81489-14|CAN86572.1|  420|Caenorhabditis elegans Hypothetical
           protein F53E4.1b protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 193 MYVVGGKLRPSGQYHLLH 246
           MY+ GG+   SGQ+H +H
Sbjct: 208 MYIFGGRSDESGQFHTIH 225


>Z81087-2|CAN86636.1|  420|Caenorhabditis elegans Hypothetical
           protein F53E4.1b protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 193 MYVVGGKLRPSGQYHLLH 246
           MY+ GG+   SGQ+H +H
Sbjct: 208 MYIFGGRSDESGQFHTIH 225


>AL117205-4|CAB55162.1|  441|Caenorhabditis elegans Hypothetical
           protein Y116A8A.4 protein.
          Length = 441

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = -3

Query: 451 YEDTLIVACPTPEQISVFISSASLISHSEPVLPYGTKAKPSVVRKPSVTSVPEKLEEKAT 272
           YE   +   PTP        S ++ +  E  +   + A P+ + KPS T+ P  L+  + 
Sbjct: 284 YEKPTLTTEPTPVTTEKSTVSTTISTSLETTIMQASSASPTSI-KPSTTTEPSPLQASSK 342

Query: 271 AET 263
             T
Sbjct: 343 PAT 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,417,599
Number of Sequences: 27780
Number of extensions: 232811
Number of successful extensions: 578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)