Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0325
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59) 29 4.6
SB_40629| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.6
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 31.5 bits (68), Expect = 0.65
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYSL 458
+T PYGI PY I PY Y + PY +
Sbjct: 583 ITCPYGITYPYDITCPYNITCPYDITWPYDI 613
Score = 31.5 bits (68), Expect = 0.65
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGV-APYSL 458
+T PYGI YGI PY +G+ PY +
Sbjct: 619 ITCPYGITCLYGITCPYGITCQFGITCPYDI 649
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPY---TAYG---AYGVAPYSLGV 464
+T PY I PY I PY YG AYG+ YS G+
Sbjct: 463 ITCPYDITCPYDIKCPYDITCLYGFTCAYGIT-YSFGI 499
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGV-APYSL 458
+T PYGI +GI PY Y + PY +
Sbjct: 631 ITCPYGITCQFGITCPYDITCPYDITCPYDI 661
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGV-APYSL 458
+T PY I PY I PY YG+ PY +
Sbjct: 607 ITWPYDITWPYDITCPYGITCLYGITCPYGI 637
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYSL 458
+T PY I PY I PY Y + PY +
Sbjct: 643 ITCPYDITCPYDITCPYDITCPYDITYPYDI 673
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYSL 458
+T PY I PY I PY Y + PY +
Sbjct: 499 ITCPYDITCPYDITCPYYITCPYDITYPYDI 529
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGV-APYSL 458
+T PY I PY I PY Y + PY +
Sbjct: 595 ITCPYNITCPYDITWPYDITWPYDITCPYGI 625
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYSL 458
+T PY I PY I PY Y + PY +
Sbjct: 517 ITCPYDITYPYDITCPYDITCPYDITYPYDI 547
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGVA-PYSL 458
+T PY I PY I PY Y + PY +
Sbjct: 715 ITYPYDITCPYHITCPYDITWPYDITWPYDI 745
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGV-APYSL 458
+T PY I PY I PY Y + PY +
Sbjct: 529 ITCPYDITCPYDITYPYDITYPYDITCPYHI 559
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGV-APYSL 458
+T PY I PY I PY Y + PY +
Sbjct: 547 ITYPYDITCPYHITCPYDITCPYDIKCPYDI 577
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGV 443
+T PY I PY I PY YG+
Sbjct: 667 ITYPYDITYPYDITCPYYITCPYGI 691
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGV-APYSL 458
+T PYGI Y I PY Y + PY +
Sbjct: 685 ITCPYGITCQYDITCPYHITCPYHITCPYDI 715
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 VTAPYGIAAPYGIAAPYTAYGAYGV-APYSL 458
+T PY I PY I PY Y + PY +
Sbjct: 697 ITCPYHITCPYHITCPYDITYPYDITCPYHI 727
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +3
Query: 375 APYGIAAPYGIAAPYTAYGAYGV-APYSLG 461
APY PY I PY Y APYS G
Sbjct: 1335 APYNTGEPYNIGVPYNTGAPYNTGAPYSTG 1364
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Frame = +3
Query: 378 PYGIAAPYGIAAPYTAYGAYGVA-PYSLG 461
PY I PY APY Y PY G
Sbjct: 1342 PYNIGVPYNTGAPYNTGAPYSTGEPYRTG 1370
>SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)
Length = 421
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 375 APYGIAAPYGIAAPYTAYGAYGV-APYSL 458
AP+G+ PYG + P + YG PY L
Sbjct: 381 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 409
>SB_40629| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 559 SIISAIKKKACYFCIADLEN 500
S+I K++ CYFC D+EN
Sbjct: 151 SLIKNCKEQTCYFCCDDIEN 170
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 375 APYGIAAPYGIAAPYTAYGAYGV-APYSL 458
AP+G+ PYG + P + YG PY L
Sbjct: 1224 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 1252
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 375 APYGIAAPYGIAAPYTAYGAYGV-APYSL 458
AP+G+ PYG + P + YG PY L
Sbjct: 1449 APFGLQVPYGYSVPCSLQTPYGYPVPYGL 1477
>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 647 IVTRPDRRPARRCQLLKHLIVDKADRATLFNNIC 546
++ RP +R ARR + + + DK RAT+F+ C
Sbjct: 635 LLCRPAKRRARRSRKKRIVRRDKLPRATIFHRRC 668
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,286,550
Number of Sequences: 59808
Number of extensions: 161272
Number of successful extensions: 713
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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