Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0325
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70854-14|AAB09153.1|   81|Caenorhabditis elegans Nematode speci...    30   1.7  
Z47067-1|CAA87328.1|  776|Caenorhabditis elegans Hypothetical pr...    28   5.3  

>U70854-14|AAB09153.1|   81|Caenorhabditis elegans Nematode specific
           peptide family,group b protein 5 protein.
          Length = 81

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 363 PLVTAPYGIAA-PYGIAAPYTAYGAYGVAPYSLGVHAW 473
           P+V++PY  A+ P   A PY AY AYG A Y    + W
Sbjct: 25  PVVSSPYYYASSPVASAYPY-AY-AYGAAAYPTAYYGW 60


>Z47067-1|CAA87328.1|  776|Caenorhabditis elegans Hypothetical
           protein C43C3.1 protein.
          Length = 776

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 151 AINEGHARAAEAVVQHNT-EAVRQAAEA--SREIHETATGT 264
           +I++ H+R +  +VQH    AVR ++ +     IHET T T
Sbjct: 391 SISDHHSRTSSGIVQHTAHHAVRDSSSSRTGTTIHETITHT 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,808,120
Number of Sequences: 27780
Number of extensions: 116002
Number of successful extensions: 269
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)