Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0324
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.7  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.0  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    22   5.3  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   5.3  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 595 GLMPPKRGVEREFAHRDAHPA 533
           GL+PP  G+     H  +HPA
Sbjct: 228 GLIPPHPGLSPHPPHLSSHPA 248


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 595 GLMPPKRGVEREFAHRDAHPA 533
           GL+PP  G+     H  +HPA
Sbjct: 120 GLIPPHPGLSPHPPHLSSHPA 140


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 567 SASLPTGMPIPQAPKSP 517
           S + PTG+P P    SP
Sbjct: 217 SVATPTGIPTPSTSASP 233


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 267 MGLLDRNEHLFYRFVADNVAEMMPI 341
           +GL+ R+  + YR +ADNVA    I
Sbjct: 150 VGLI-RDTAVLYRLLADNVANFNKI 173


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 285 NEHLFYRFVADNVAEMMPIVYTPTVGLACQKFG 383
           N H F RF+A N+  ++  +Y+  V      FG
Sbjct: 108 NCHTFGRFLAPNLTYLLVALYSGYVWTDILGFG 140


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,497
Number of Sequences: 336
Number of extensions: 4112
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)