Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0324
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    62   5e-11
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    28   1.1  
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    27   3.3  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   4.3  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    26   5.7  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   5.7  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    25   7.5  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
 Frame = +3

Query: 258 IYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITI--HDK 431
           +YL  L   N+ LFY  ++ ++ EM+PI+YTPT G A ++F  +YR P G ++ I  +D 
Sbjct: 74  LYLSQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDIDHNDL 133

Query: 432 GHVYDVLKNWPETD-VRAIVVTDGE 503
            ++   L  + ++D V  I++TD E
Sbjct: 134 SYIKQQLSEFGKSDSVEYIIITDSE 158



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 22/46 (47%), Positives = 27/46 (58%)
 Frame = +1

Query: 79  LSGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELC 216
           L G+  L  P  NK  AFT EERQ   I   LPP V+T ++QV+ C
Sbjct: 13  LKGVTLLNSPRYNKDTAFTPEERQKFEISSRLPPIVETLQQQVDRC 58


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -2

Query: 344 HNWHHFSHVIRDETVEQMLIAVQEPHKIDVLLSGFSYLSIESLHSSTCSS 195
           H W  +SHVI        L  +     + +     S L+I  LHS+T  S
Sbjct: 224 HGWFDYSHVISRFNEVPALYVISGVILVSIAFFNVSGLAITKLHSATTRS 273


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = -2

Query: 326 SHVIRDETV-EQMLIAVQEPH--KIDVLLSGFSYLSIESLHSSTCSSCVLTRGGNNPCMP 156
           + +++DE+   +ML A+   +  + ++L+   S+L I  +  S C+   L +   N  + 
Sbjct: 188 AELLKDESFGNEMLHAIGSTYVQRANILIQSQSFLGIRGVWGSLCAKGTLLKDTWNTVVS 247

Query: 155 KS*RSSMVKAMPLLRPGCLRWSRPER 78
                S   A+     G  +WS+ +R
Sbjct: 248 AVDVQSSAAALAKAEEGEEQWSKEKR 273


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 226 IDRYENPLNNTSILWGSWTAMSICS--TVSSRITW 324
           + + ++ LN+TS++ G+W  +   S   VS  +TW
Sbjct: 65  VGKGDSHLNHTSVMTGNWNILPYPSFGKVSPNVTW 99


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 399 PRGLFITIHDKGHVYDVLKNWPETDVRA 482
           P GL+I + +K   +D  + W + D RA
Sbjct: 740 PPGLYIPLAEKRTAWDCFERWIQVDPRA 767


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 299 EQMLIAVQEPHKIDVLLSGFSYLSIESLHSSTCSSC 192
           E   +  + PH+I   L  FS + I  +    CS+C
Sbjct: 557 EDQTVLGELPHQIRGFLHNFSLMKISGMAYPQCSAC 592


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 580 SEASSPQSMVYPSLSNVGTNNPVHALT 660
           S ++ PQ  V PS+S V  N PVH  T
Sbjct: 217 SVSTPPQPAVAPSVSAVVPNLPVHPAT 243


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 562 RALHRAS---EASSPQSMVYPSLSNVGTNNPVHALTNPV 669
           R +HR+     +  P+SM  PS S +  + P+H + +P+
Sbjct: 451 REMHRSQVIQTSGRPKSMAPPSPSPISPSFPLHEIQSPM 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,066
Number of Sequences: 5004
Number of extensions: 64824
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)