Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0324
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)             137   7e-33
SB_26523| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score =  137 bits (332), Expect = 7e-33
 Identities = 57/85 (67%), Positives = 74/85 (87%)
 Frame = +3

Query: 252 QYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDK 431
           +YI LM LL+RNE LF+R + D   E+MPIVYTPTVGLAC+K+G+++RRPRGLFI+IHDK
Sbjct: 118 KYIQLMALLERNESLFFRVLFDYTEELMPIVYTPTVGLACRKYGMIFRRPRGLFISIHDK 177

Query: 432 GHVYDVLKNWPETDVRAIVVTDGER 506
           GH+ D++ NWP T+V+AIV+TDGER
Sbjct: 178 GHIRDIVSNWPTTEVKAIVMTDGER 202



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/57 (50%), Positives = 38/57 (66%)
 Frame = +1

Query: 79  LSGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPL 249
           + G D ++   LNKG+AFT+EERQ+LGIHGLLPP V +QE Q +     + R  N L
Sbjct: 60  IRGTDIMRDSHLNKGLAFTLEERQILGIHGLLPPCVISQEIQAQRVYRELQRKPNDL 116



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/22 (95%), Positives = 21/22 (95%)
 Frame = +2

Query: 509 LGLGDLGACGMGIPVGKLALYT 574
           LGLGDLG CGMGIPVGKLALYT
Sbjct: 204 LGLGDLGCCGMGIPVGKLALYT 225


>SB_26523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +1

Query: 418 RSTIRDMYTMFLRTGRRRTSAPLL*PTENVFGPGRFGRLRDGHPCGQTRALHRASEASSP 597
           R  I+D Y   L   R R ++    P E    PGR G+   G   G     H+ S + SP
Sbjct: 45  RRIIQDKYKPQLEMSRTRHTST---PNERADLPGRPGKSERGLRPGNAETSHKGSRSQSP 101

Query: 598 Q 600
           Q
Sbjct: 102 Q 102


>SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = -2

Query: 260 DVLLSGFSYLSIESLHS-STCSSCVLTRGGNN------PCMPKS*RSSMVKAMPLLRPGC 102
           +++L   +  S  SL S +T +    T   NN      PC  K   S  V+  PL+   C
Sbjct: 328 ELILQKMTQSSANSLISEATLAGMTFTNNRNNIWPTTVPCKTKDSTSDQVEDEPLMTTRC 387

Query: 101 LRWSRPERPLV 69
           LR+ R  R  V
Sbjct: 388 LRFVRKSRSKV 398


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,058,173
Number of Sequences: 59808
Number of extensions: 574309
Number of successful extensions: 1734
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1732
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)