Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0324
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...   118   3e-27
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z67738-1|CAA91545.2|  352|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP ubiquit...    27   9.2  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score =  118 bits (285), Expect = 3e-27
 Identities = 53/87 (60%), Positives = 66/87 (75%), Gaps = 2/87 (2%)
 Frame = +3

Query: 252 QYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDK 431
           +YI L  L DRNE L+YR + DNV E+MPIVYTPTVG ACQ FG +YR P+GL+ITI+D 
Sbjct: 107 KYIQLDSLQDRNEKLYYRVLCDNVKELMPIVYTPTVGQACQHFGFIYRNPKGLYITINDN 166

Query: 432 --GHVYDVLKNWPETDVRAIVVTDGER 506
               ++ +L NWP  +VRAIV+TDGER
Sbjct: 167 SISKIHQILANWPTENVRAIVITDGER 193



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = +1

Query: 85  GLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQ 204
           G+D LK PGLNKGMAF++ ERQ LG+HGLLPP   T+E+Q
Sbjct: 51  GIDLLKSPGLNKGMAFSLHERQYLGVHGLLPPAFMTEEQQ 90



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 20/24 (83%), Positives = 21/24 (87%)
 Frame = +2

Query: 509 LGLGDLGACGMGIPVGKLALYTAL 580
           LGLGDLG  G+GIPVGKLALY AL
Sbjct: 195 LGLGDLGTYGIGIPVGKLALYVAL 218


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 256 TSILWGSWTAMSICSTVS 309
           TS +WG W A S C TV+
Sbjct: 52  TSAIWGDWGAWSTCPTVT 69


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 256 TSILWGSWTAMSICSTVS 309
           TS +WG W A S C TV+
Sbjct: 52  TSAIWGDWGAWSTCPTVT 69


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 256 TSILWGSWTAMSICSTVS 309
           TS +WG W A S C TV+
Sbjct: 52  TSAIWGDWGAWSTCPTVT 69


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 256 TSILWGSWTAMSICSTVS 309
           TS +WG W A S C TV+
Sbjct: 52  TSAIWGDWGAWSTCPTVT 69


>Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical
           protein F17B5.3 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 451 RTSYTCPLSWIVMKRPLGR 395
           R + TCP  WI  +RP GR
Sbjct: 66  RPTRTCPRDWITFERPQGR 84


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 167 PCMPKS*RSSMVKAMPLLRPGCLRWSRPERPLVGCPSPEPHNPIRS 30
           P  P+  R+   ++ P  RP     S   RP    PSPEP NP R+
Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRT 186


>Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical
           protein C31G12.2 protein.
          Length = 195

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 523 IAQAQIRSPSVTTMARTSVSGQFLRTSYTCPLSWIVMKRPLG 398
           I   Q+ + + TT   T+ +     T   CP  W   +RP G
Sbjct: 14  IPTQQVETTTSTTTTTTTTTSTTTTTPIPCPTGWEEFERPSG 55


>Z67738-1|CAA91545.2|  352|Caenorhabditis elegans Hypothetical
           protein W03G11.2 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = -2

Query: 389 HKPELLTGQANRRSVHNWHHFSHVIRDETVEQMLIAVQEPHKIDV-LLSGFSYLSIESLH 213
           HK  +   +       +W  F H ++ + +E  +  V + + I + +     +L I  L 
Sbjct: 6   HKDVIFNDELEENEKFSWDEFVHKLKQQQLEGQVPVVSKRYAISITVFFALLFLGISQLL 65

Query: 212 SSTCSSCVLTR 180
           +S     +L R
Sbjct: 66  ASANEKVILIR 76


>U42846-1|AAA83600.2|  872|Caenorhabditis elegans Hypothetical
           protein T19D2.1 protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 244 PLNNTSILWGSWTAMSICST 303
           PL N S LW  W++ S CST
Sbjct: 820 PLVNRSGLWTGWSSWSSCST 839


>AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP
           ubiquitin-protein ligase protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 547 DAHPAGAQIAQAQIRSPSVTTMARTSVSGQFLRTSYT 437
           D  P G++ A   I   S+ T+   +  G FLRTS T
Sbjct: 516 DIDPGGSECAMCNISEDSMETIGLLNGFGIFLRTSST 552


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,094,272
Number of Sequences: 27780
Number of extensions: 401258
Number of successful extensions: 1198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)