Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0324
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   2.0  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   4.6  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   4.6  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   4.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 535  RDGHPCGQTRALHRASEASSPQSMVYPSLSNVGTNNPVHALTNPVV 672
            ++G P     A   A+ ASSP  +   S +  GT++P ++L    V
Sbjct: 898  KNGEPTSAAFAQGFATAASSPGLLERASPAFSGTSSPTNSLVGKTV 943


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -2

Query: 77  PLVGCPSPEPHNPIR-----SRSISLYVH 6
           PL+   +PE H+PIR     SRS+ L  H
Sbjct: 71  PLLRFENPETHHPIRHGRRQSRSMDLNAH 99


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 350 SVHNWHHFSHVIRDETVEQMLIA 282
           SVH+ HH   V RD   E +L+A
Sbjct: 21  SVHHCHHNGVVHRDLKPENLLLA 43


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 220 LSIDRYENPLNNTSILWGSW 279
           LS+D Y+N L+    L G W
Sbjct: 159 LSMDGYQNILDKKDELLGEW 178


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 220 LSIDRYENPLNNTSILWGSW 279
           LS+D Y+N L+    L G W
Sbjct: 159 LSMDGYQNILDKKDELLGEW 178


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 220 LSIDRYENPLNNTSILWGSW 279
           LS+D Y+N L+    L G W
Sbjct: 159 LSMDGYQNILDKKDELLGEW 178


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = -3

Query: 355 VGVYTIGIISATLSATKR*NRCSLRSKSPIR*MYC*VDFRIYRSRAC 215
           VG Y +  I+ + + + +    ++    P++ + C  D  ++ S AC
Sbjct: 2   VGYYQMKQITNSTTMSVKNEISTVEPVDPVKSLVCSPDLSVFTSPAC 48


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -2

Query: 110 PGCLRWSRPERPLV 69
           P   +W  P RP+V
Sbjct: 837 PNLTKWGNPNRPIV 850


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,582
Number of Sequences: 438
Number of extensions: 5387
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)