Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0323
         (716 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    34   4.0  
UniRef50_O15792 Cluster: CG2; n=89; Plasmodium falciparum|Rep: C...    33   7.0  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +2

Query: 620  GRQRLDSAPGISEVHG*R 673
            GRQRL SAPGI+EVHG R
Sbjct: 969  GRQRLGSAPGIAEVHGRR 986


>UniRef50_O15792 Cluster: CG2; n=89; Plasmodium falciparum|Rep: CG2 -
            Plasmodium falciparum
          Length = 2819

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 11/24 (45%), Positives = 21/24 (87%)
 Frame = +3

Query: 552  NSLDVLK*WQLYLYYKCLIVHQKV 623
            N+LDV+K  +L++Y+KCL+++ K+
Sbjct: 1324 NNLDVIKNRELFIYHKCLVINMKL 1347


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,168,912
Number of Sequences: 1657284
Number of extensions: 15352834
Number of successful extensions: 28625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28624
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)