Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0323
         (716 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167     29   4.9  
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340...    28   8.5  

>01_06_1483 + 37683559-37683922,37684916-37685193,37685865-37686167
          Length = 314

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
 Frame = +3

Query: 297 TCSSISSTICDAILFCLRTGRLKVEWVHCLILILCIYLR-NKLITIDRTRDDYLPVLLWC 473
           +C   +    D + + L +GR+    +H LIL++C  L   + +TI+     YL + L C
Sbjct: 159 SCGYFAYDQLDMLRYRLYSGRIPGILMHHLILLICFTLALYRNVTIN-----YLILTLVC 213

Query: 474 *INVSQHPYIRRTNNLLAHHQYL*FPNSLDVLK*WQLY----------LYYKCLIVHQKV 623
            ++ S   +IR+   +     Y      L+ +  W  +          + YK +I   K 
Sbjct: 214 ELH-SVFLHIRKLRRMAGFRDYNRKIVKLEWVLNWTTFVSARVACHILITYKLIIDAHKF 272

Query: 624 GSGLTLPLAFLKSMG 668
            SG+ LPLA     G
Sbjct: 273 DSGIELPLALFGMAG 287


>02_01_0473 -
           3403547-3404241,3404455-3404983,3405299-3405477,
           3405868-3405952,3406136-3406482,3407061-3407159,
           3408135-3408636
          Length = 811

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 279 IIITNKTCSSISSTICDAILFCLRTGRLKVEWVHCLILI 395
           ++   KT  S ++ +    L CL   R+ +EW+H  I++
Sbjct: 728 LLAAQKTLKSCATAVQAEALACLEGLRVAMEWIHMPIIL 766


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,495,043
Number of Sequences: 37544
Number of extensions: 400603
Number of successful extensions: 732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)