Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0323
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav (...    29   3.3  
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (...    29   3.3  
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.      29   3.3  

>U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform a protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 432 DRTRDDYLPVLLWC*INVSQHPYIRRTNNLLAHHQY 539
           + TR++++  LL    NVS   Y+R TN+ +A H +
Sbjct: 551 EATRNNWMTALLLSKSNVSPTDYLRDTNHKVAFHSF 586


>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform b protein.
          Length = 1007

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 432 DRTRDDYLPVLLWC*INVSQHPYIRRTNNLLAHHQY 539
           + TR++++  LL    NVS   Y+R TN+ +A H +
Sbjct: 583 EATRNNWMTALLLSKSNVSPTDYLRDTNHKVAFHSF 618


>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
          Length = 1007

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 432 DRTRDDYLPVLLWC*INVSQHPYIRRTNNLLAHHQY 539
           + TR++++  LL    NVS   Y+R TN+ +A H +
Sbjct: 583 EATRNNWMTALLLSKSNVSPTDYLRDTNHKVAFHSF 618


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,275,546
Number of Sequences: 27780
Number of extensions: 380249
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)