Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0323
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    26   0.31 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           26   0.31 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.7  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 399 CIYLRNKLITIDRTRDDYLPVLLW 470
           C+YL N  +  DRT    LPV+ W
Sbjct: 105 CLYL-NVYVPADRTPSQSLPVIFW 127



 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 661 PWVTGITYPQG 693
           PWVTG+T  +G
Sbjct: 333 PWVTGVTSEEG 343


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 399 CIYLRNKLITIDRTRDDYLPVLLW 470
           C+YL N  +  DRT    LPV+ W
Sbjct: 105 CLYL-NVYVPADRTPSQSLPVIFW 127



 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 661 PWVTGITYPQG 693
           PWVTG+T  +G
Sbjct: 333 PWVTGVTSEEG 343


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 591  YYKCLIVHQKVGSGLTLPLAFLKSMGDGNNLP 686
            Y   L  H K+GS  + P+  +++ G    +P
Sbjct: 1471 YQLYLTSHNKIGSSPSSPVLSVRTQGQAPGIP 1502


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 591  YYKCLIVHQKVGSGLTLPLAFLKSMGDGNNLP 686
            Y   L  H K+GS  + P+  +++ G    +P
Sbjct: 1467 YQLYLTSHNKIGSSPSSPVLSVRTQGQAPGIP 1498


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 225 WNIMFFF*LILTG 187
           W+ +FFF LIL G
Sbjct: 376 WSCLFFFMLILIG 388


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 225 WNIMFFF*LILTG 187
           W+ +FFF LIL G
Sbjct: 429 WSCLFFFMLILIG 441


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 504 RRTNNLLAHHQY 539
           R  N+LL HH+Y
Sbjct: 759 RSVNHLLTHHEY 770


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,454
Number of Sequences: 438
Number of extensions: 4921
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)