Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0323
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnor...    30   1.8  
At3g48580.1 68416.m05304 xyloglucan:xyloglucosyl transferase, pu...    28   7.1  

>At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnormal
           floral organs protein (AFO) / filamentous flower protein
           (FIL) identical to YABBY1 [Arabidopsis thaliana]
           GI:4928749, abnormal floral organs protein (AFO)
           [Arabidopsis thaliana] GI:4322477; supporting cDNA
           gi|4322476|gb|AF087015.1|AF087015
          Length = 229

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 376 CIV*FLFCVFICAIN*SPSIVREMITYRCCCGVELMFLNTPIYVEP 513
           C V   FC  I A+N   + + + +T RC C   L+ +N   YV P
Sbjct: 26  CYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLP 71


>At3g48580.1 68416.m05304 xyloglucan:xyloglucosyl transferase,
           putative / xyloglucan endotransglycosylase, putative /
           endo-xyloglucan transferase, putative similar to
           endoxyloglucan transferase EXGT-A4 GI:5139002 from
           [Arabidopsis thaliana]
          Length = 277

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 625 PTFWWTIKHL*YK*SCHYFNTSKLFGNYRY 536
           P FWW  K L  K    Y N  K + +Y Y
Sbjct: 230 PKFWWNRKQLSSKEKTLYLNARKTYLDYDY 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,934,658
Number of Sequences: 28952
Number of extensions: 334349
Number of successful extensions: 620
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)