Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0321
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    29   0.45 
SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   2.4  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    26   4.2  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   4.2  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   5.5  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   7.3  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.3  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   9.6  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   9.6  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = -2

Query: 399 KVHHKRLKCTVFYKNVLHYL------M*YKVDEYMFNLNVYLYILM 280
           K+HHK +  T +  +  HYL      + Y +  + F LN Y+Y+L+
Sbjct: 184 KLHHKWIVPTPYSSHAFHYLDGYSQSLPYHMFPFFFPLNKYVYLLL 229


>SPCC594.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
 Frame = -3

Query: 128 TCHL---EKNVLHKKWSEW 81
           TCHL   EK+ + KKW EW
Sbjct: 4   TCHLLKREKDEMKKKWREW 22


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 375 ISVVCDVLYLCLSHFDFIYLGVG 443
           IS++C VL LCL  ++F  +  G
Sbjct: 257 ISLICSVLVLCLLGYEFFLVYAG 279


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +3

Query: 237 LLGYPT*CSYSSEIPLKYINIHLN*TCIHLLCITLNNEEHSYKKRYISVVCDVLYLCLSH 416
           LLGY   CSYS    + Y ++      + +    L N+E   KK    +   ++  CL  
Sbjct: 179 LLGYFQ-CSYS----VFYASVFYILLGVFIRVFYLVNKEKFEKKELAFLFSSIVVACLIQ 233

Query: 417 FDFIYLGVGNIS 452
           F+ + LG  N+S
Sbjct: 234 FNVLPLGTINLS 245


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 73  IKNHSLHFLCKTFFSKWQVYFTIRITSQLTIIKLSTKTCYYYHTLNLVRYSKLS 234
           +K+ SLHF    FFS   + +T      +  I  S +        NL+++S LS
Sbjct: 270 LKSFSLHFFALQFFSTSLIQYTHICRKCVITILQSYQQLIVDQPANLLKFSLLS 323


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 632 EVKLMKNRLELTWALAQSLIFVALLFKRLFKILHDRYVAVL 510
           E   +K   + +W  A SL     L+K++  ++H R +  L
Sbjct: 222 ETSSIKRAFQESWLSALSLPLSVNLYKQVLNVIHKRVIPFL 262


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 115 SKWQVYFTIRI--TSQLTIIKLSTKTCYYYHTLNL 213
           +KW+  F + I  T+ +T++  S  T ++Y  LN+
Sbjct: 102 NKWKFLFILNIGVTALITVLGWSQHTSFFYAFLNI 136


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 447 YYPHPNK*NQNDLSKDKVHHKRLKCTVFYKNVLHYL-M*YKVDEYMFNLNVYLYI 286
           YY  P     ++L+      K+   +  +KN LHYL   + + E++ N N Y  I
Sbjct: 68  YYEIPEDDELDELASIPQWFKKNVTSNIFKNFLHYLKSLFPIIEWLPNYNPYWLI 122


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 127 VYFTIRITSQLTIIKLSTKTCYYYHTLNLVRY 222
           VYF I+     T+I L    CY Y T+ +  +
Sbjct: 397 VYFFIKFDIYFTLIVLIMTLCYCYVTVKITSW 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,059
Number of Sequences: 5004
Number of extensions: 43877
Number of successful extensions: 78
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)