Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0321
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine rece...    31   0.95 
AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine re...    29   2.2  
AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 32 protein.
          Length = 338

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 85  SLHFLCKTFFSKWQVYFTIRITSQLTIIKLSTKTCYYYHTLN-LVRYSKLSHCLAILRNA 261
           ++H    T    W +Y +   +  +T I  +++ C+  H LN  VR+  ++  LA+  + 
Sbjct: 75  NVHNASYTIIETWSLYRSFAYSDNMTAIMFTSEECFVQHVLNSCVRFLFIAIELALNVDR 134

Query: 262 ATVVKF 279
             V+ F
Sbjct: 135 IIVILF 140


>AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical
           protein C35A11.1 protein.
          Length = 429

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 318 IHLLCITLNNEEHSYKKRYISVVCDVLYLCLSHFDFIYLGVGNISYRK*YSDV 476
           I +LC     + H Y   YI  V D+L L  S  +F+   V +  YR+ + +V
Sbjct: 307 ISILCAIFTTDVHRYLYFYIGDVLDLLSLVNSSVNFVLYCVMSSRYRQTFWEV 359


>AF016422-8|AAW88392.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 60 protein.
          Length = 289

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
 Frame = +1

Query: 4   FFFFFKVINRLFAHFTRIYFYK*IKNHS-----LHFLCK-TFFSKWQVY----FTIRITS 153
           F  FF   +R+FA F  IY++K  ++H      L  +C  T F ++ ++    FTI + S
Sbjct: 97  FLVFFMTSDRVFASFFPIYYHK-YRSHCPTATILLLMCAYTVFEQYILFVMCDFTIDVPS 155

Query: 154 QLTIIKLSTKTCYYYHTL 207
               +  +   CY+ + L
Sbjct: 156 SCMHLGCTVSKCYFEYWL 173


>AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical
           protein H11E01.2 protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 73  IKNHSLHFLCKTFFSKWQVYFTIRITSQLTIIKLSTKTCYYYH 201
           +K H L     + FS+  V FT+ +  +L   K   ++ YY H
Sbjct: 143 LKQHGLFISLLSSFSQISVMFTMPVAGELCESKYGWESVYYGH 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,353,372
Number of Sequences: 27780
Number of extensions: 236047
Number of successful extensions: 400
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)