Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0321
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    26   0.28 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   1.9  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    22   5.9  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    22   5.9  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    22   5.9  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    22   5.9  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    22   5.9  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    22   5.9  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    22   5.9  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    22   5.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.8  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 135 YYSNYVTTNNYKIIY*NVLLLSHI 206
           Y +NY   NNYK +Y N+  +  I
Sbjct: 313 YSNNYYNNNNYKKLYYNINYIEQI 336


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 290 YKYTFKLNMYSSTLYY 337
           YKY +  N Y+  LYY
Sbjct: 95  YKYNYNNNNYNKKLYY 110


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 290 YKYTFKLNMYSSTLYY 337
           YKY +  N Y+  LYY
Sbjct: 95  YKYNYNNNNYNKKLYY 110


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 290 YKYTFKLNMYSSTLYY 337
           YKY +  N Y+  LYY
Sbjct: 95  YKYNYNNNNYNKKLYY 110


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 290 YKYTFKLNMYSSTLYY 337
           YKY +  N Y+  LYY
Sbjct: 95  YKYNYNNNNYNKKLYY 110


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 138 YSNYVTTNNYKIIY*NVLLLSHI 206
           Y+N    NNYK +Y N+  +  I
Sbjct: 97  YNNNNNYNNYKKLYYNINYIEQI 119


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 138 YSNYVTTNNYKIIY*NVLLLSHI 206
           Y+N    NNYK +Y N+  +  I
Sbjct: 97  YNNNNNYNNYKKLYYNINYIEQI 119


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 138 YSNYVTTNNYKIIY*NVLLLSHI 206
           Y+N    NNYK +Y N+  +  I
Sbjct: 97  YNNNNNYNNYKKLYYNINYIEQI 119


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 138 YSNYVTTNNYKIIY*NVLLLSHI 206
           Y+N    NNYK +Y N+  +  I
Sbjct: 97  YNNNNNYNNYKKLYYNINYIEQI 119


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 138 YSNYVTTNNYKIIY*NVLLLSHI 206
           Y+N    NNYK +Y N+  +  I
Sbjct: 97  YNNNNNYNNYKKLYYNINYIEQI 119


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 138 YSNYVTTNNYKIIY*NVLLLSHI 206
           Y+N    NNYK +Y N+  +  I
Sbjct: 97  YNNNNNYNNYKKLYYNINYIEQI 119


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 138 YSNYVTTNNYKIIY*NVLLLSHI 206
           Y+N    NNYK +Y N+  +  I
Sbjct: 97  YNNNNNYNNYKKLYYNINYIEQI 119


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 138 YSNYVTTNNYKIIY*NVLLLSHI 206
           Y+N    NNYK +Y N+  +  I
Sbjct: 97  YNNNNNYNNYKKLYYNINYIEQI 119


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 596 WALAQSLIFVALLFKRLFKILHD 528
           WA    LIF+ L + RL   + +
Sbjct: 227 WAYVIPLIFIILFYSRLLSSIRN 249


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 596 WALAQSLIFVALLFKRLFKILHD 528
           WA    LIF+ L + RL   + +
Sbjct: 227 WAYVIPLIFIILFYSRLLSSIRN 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,412
Number of Sequences: 438
Number of extensions: 3311
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)