Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0319
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    31   0.19 
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    28   1.4  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   1.4  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    26   4.2  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   4.2  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.5  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    25   7.3  

>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 540 FWGRGAVKH*IGTLKGAPDLKLGRESPRTW 629
           +WGR   +H +G L+G P+L        +W
Sbjct: 227 YWGRAIARHFVGQLRGGPNLTYSSVQNASW 256


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
 Frame = +3

Query: 462 VDSNVKGRKTVYQGDGHYVNHHPNQVF----WGRGAVKH*IGT 578
           V+ + KG   V  GDG Y N H  QV      G G  K  +GT
Sbjct: 44  VEPSAKGAHLVVGGDGRYFNFHAIQVIAAIAAGNGVEKIIVGT 86


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 501 PDRRFFAL*RWSPRSLIVDSCSK 433
           PD +FF +  W P  L + SC K
Sbjct: 220 PDAKFFGIFDWDPHGLCIYSCFK 242


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 173 LALPNLIALQHIPLSPAGVIAKRPAPIAFPTVAQPEWR 286
           L+L  L +  + P+ P G  A R  P   P +A+P +R
Sbjct: 310 LSLIPLSSSPNHPIQPIGFPASRKTPTYVPPIARPYFR 347


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 417 LSVVPVWNKSPLLKNVDSNVKGRKTVYQGDGHY 515
           +++ PV N +P+ K VDS  + R   +  +G Y
Sbjct: 1   MTLFPVLNNTPVGKQVDSIYESRLDQFLSEGQY 33


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 468 SPRSLIVDSCSKLEQHSTLSRSILLI 391
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 337 VKSAHFLTNRPKSAKSLINQKNRP 408
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
           Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 474 VKGRKTVYQGDGHYVNHHPNQV 539
           +K +   Y G G+YV H P+++
Sbjct: 143 LKSKTLAYDGRGNYVVHQPSEI 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,559
Number of Sequences: 5004
Number of extensions: 58427
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)