Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0319
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0258 - 11153709-11156090                                         31   1.1  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.4  
08_01_0038 - 282431-283954                                             28   5.7  
04_03_0770 + 19420249-19420359,19421691-19421763,19421887-194219...    28   5.7  
06_01_0092 - 775290-775691                                             28   7.5  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   9.9  

>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 311 NINAYNLPFAIQAAQLLGRRSVRASSL--LRQLAKGGCAARRLSWVT 177
           N+N YNL F      +LG++S   + L  L ++++ GC   R++W T
Sbjct: 390 NVNTYNLIFG-----MLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNT 431


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 125 ITIHWPSFYNVV-TGKTLALPNLIALQH 205
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>08_01_0038 - 282431-283954
          Length = 507

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 257 FPTVAQ-PEWRMANCKR*YFVKIRVKFLLNQLIF*PIGRNRQNPL*IKRIDRDRVECCSS 433
           FP++A+ P  R   C + Y VK R   LL+QLI     + R + L     + D ++   S
Sbjct: 227 FPSLARLPVVRRLLCAKAYHVKRRWDQLLDQLIDDHASKRRSSMLDNNDEESDFIDVLLS 286

Query: 434 LEQE 445
           ++QE
Sbjct: 287 IQQE 290


>04_03_0770 +
           19420249-19420359,19421691-19421763,19421887-19421964,
           19422223-19422284,19422404-19422472,19422672-19422700,
           19422784-19422991,19423071-19423301,19424079-19424132,
           19425344-19426292,19426853-19426863
          Length = 624

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 24/82 (29%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
 Frame = +2

Query: 29  IDSDKGYNQKPLRFAIYFRGGARYPIRPIVSRITIHW-----PSFYNVVTGKTLALPNLI 193
           I S  G N KPL  A   R    YP           W     P F   +T      P + 
Sbjct: 445 IPSKAGLN-KPLFSATDLRAPMNYPRAMSTKSYGPGWQSSVAPKFTPRITSLPTTSPRIS 503

Query: 194 ALQHIPLSPAGVIAKRPAPIAF 259
            L  +P  PA V A RP  + +
Sbjct: 504 ELHELPRPPANVGAARPGLVGY 525


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -2

Query: 245 RASSLLRQLAKGGCAARR 192
           RA+SLLRQL + GCAA +
Sbjct: 22  RAASLLRQLIEDGCAAAK 39


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 137 WPSFYNVV-TGKTLALPNLIALQH 205
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,582,979
Number of Sequences: 37544
Number of extensions: 410379
Number of successful extensions: 1080
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)