Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0319
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decappi...    33   0.13 
U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter...    29   2.2  
U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter...    29   2.2  
L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.     29   2.2  
Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AC024826-14|AAF60791.1|  332|Caenorhabditis elegans Mrna decapping
           enzyme protein 1 protein.
          Length = 332

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 173 LALPNLIALQHIPLSPAGVIAKRP-APIAFPTVAQPEWRMANCKR*YFV 316
           LA  NL  LQ I ++ + ++ K P A I     A+ EW  +NC+  +FV
Sbjct: 12  LAAKNLAQLQKIDIAASKILDKMPFAAIYHIDAARKEWNQSNCEGTFFV 60


>U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform a protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 578 PKGSPRFKAWPGKPANVARKG 640
           PKG P  K WPG P +V   G
Sbjct: 156 PKGPPGIKGWPGFPGDVGPPG 176


>U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform b protein.
          Length = 372

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 578 PKGSPRFKAWPGKPANVARKG 640
           PKG P  K WPG P +V   G
Sbjct: 193 PKGPPGIKGWPGFPGDVGPPG 213


>L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.
          Length = 356

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 578 PKGSPRFKAWPGKPANVARKG 640
           PKG P  K WPG P +V   G
Sbjct: 177 PKGPPGIKGWPGFPGDVGPPG 197


>Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical
           protein F25H2.7 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = -3

Query: 370 SAYWLKNELI*QKFNANFNKILTLTICHSPFRLRNCWEGDRCGPLRYYASWRKGDVLQG 194
           ++ W + + I   +       LT  + HSP    + W   RC     Y +WR  D   G
Sbjct: 278 NSVWSETDFIFHGWQKKRKDKLTFAMWHSPLIYDSPWNLTRCSKGVAYLNWRYKDSFIG 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,341,139
Number of Sequences: 27780
Number of extensions: 340659
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)