Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0319
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.28 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.84 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = -2

Query: 536 LIRVMVHVVAIAL--IDGFSPF 477
           L+ V VHVVA+ L  +D FSPF
Sbjct: 571 LVMVSVHVVALVLYLLDRFSPF 592


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 435 WNKSPLLKNVDSNVKGRKTVYQGDGHYVNHHPN 533
           W++  L++  DS  K    VY  D H+V HH N
Sbjct: 255 WHQKELVRR-DSRRKNYGGVYHLDNHHV-HHAN 285


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 163 SHDVVKRRPVNCNTTHYRANWVPGP 89
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 578  PKGSPRFKAWPGKPANVAR 634
            PKG+ ++K WP K    +R
Sbjct: 1014 PKGNMQWKIWPMKGEEKSR 1032


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 469 ESTFFNSGLLFQTGTTLNPI 410
           E  +  SG L+   TT+NPI
Sbjct: 307 EWLYILSGCLYYFSTTINPI 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,499
Number of Sequences: 438
Number of extensions: 4706
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)