Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0318
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             158   5e-41
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.8  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   8.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  158 bits (383), Expect = 5e-41
 Identities = 82/121 (67%), Positives = 87/121 (71%)
 Frame = +3

Query: 312 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 491
           EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC
Sbjct: 1   EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 60

Query: 492 DVDIRKXXXXXXXXXXXXXXXLESPTRMQKEITSFSPHRQ*RIKNIGSPERKVLPYGSGG 671
           DVDIRK                    RMQKEIT+ +P    +IK I  PE+K   +  G 
Sbjct: 61  DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTM-KIKIIAPPEKKYSVWIGGS 119

Query: 672 I 674
           I
Sbjct: 120 I 120


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 319 PPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPR 432
           PP    +     +  P   S LS T  ++A+ L   PR
Sbjct: 678 PPARSPSSQAQASQCPQTASLLSSTHSTLARSLMEGPR 715


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 590 KLFAPSTMKNKEHWFSREESTSVW 661
           +LFA   MK   ++F++  ST++W
Sbjct: 465 QLFADRGMKVYYYFFTQRTSTNLW 488


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 60  AVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRP 191
           ++  +++HR        C P   +L +I + P HP +  S S P
Sbjct: 62  SLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS-STSLP 104


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +3

Query: 147 TP-PRHPASGLSRSRPHRLPHEDPHRARLLVHYH 245
           TP P H   G   S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 120 VGDTVAGVQHDTGGTTGRVQREHGLDGDVHG 28
           VGD +A ++ D  G    +  E+G  G   G
Sbjct: 42  VGDDIAWMKFDKEGRLRAINPEYGFFGVAPG 72


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 652 STFLSGEPMFFILHCR 605
           ST L  +P F  LHC+
Sbjct: 35  STILRLDPKFIALHCQ 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,093
Number of Sequences: 438
Number of extensions: 5463
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)