Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0316
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    28   1.3  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.3  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    27   3.1  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   5.4  
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    26   5.4  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   7.1  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   9.4  

>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 496 TPEVGVSW*TTSVQKVNGSPEVFGGQVQDG 407
           T E G  W T+S    N SP VFG  + DG
Sbjct: 326 TAEQGCQWGTSSGDYGNWSPLVFGAGMTDG 355


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 109 VVAQLDIPVIHSSNVLKL*LHQHLPQSLATHHL 207
           +  Q D+P +H+ N LK    +H   S++  +L
Sbjct: 819 IAGQFDLPQVHAMNTLKTIFTEHRLSSVSVEYL 851


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -2

Query: 158 FRTLDEWITGISNWATTNRNMVLHSAFCFK 69
           F  +  WI G   WA    N  LH   C +
Sbjct: 518 FTNVSHWIIGSDAWAYDLGNSALHQVLCLE 547


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 429 NTSGDPFTFCTEVVHQDTPTSGVFSFA 509
           NT+ +PF F  +   +  P + VFSF+
Sbjct: 264 NTAANPFAFAKKENEESKPLTPVFSFS 290


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 385 IALVPQAPGHGSTHFPP*QVRVGEHSPLVEHSSLQP 278
           +AL   + G    H  P Q+R+   S  VEHS  QP
Sbjct: 2   VALFKSSLGRPEQHQTP-QIRISPASSNVEHSEKQP 36


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -3

Query: 352 STHFPP*QVRVGEHSPLV--EHSSLQPYVWISEITCAHVQRPALHKALLPQG---DGLQG 188
           STHF P       HSPL+    S+L P    S +  +++ +P+L   L   G   +GL  
Sbjct: 420 STHFTPANNSSANHSPLMAPNASTLNP----SSLGASNLSQPSLANHLSSSGLFDNGLFS 475

Query: 187 SG 182
           SG
Sbjct: 476 SG 477


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 6/27 (22%)
 Frame = -3

Query: 112 LQIGIWSCTRHSAL------NPHDPSQ 50
           LQ GIWSC   + L      NP+ PSQ
Sbjct: 572 LQTGIWSCPVQNCLYFAVCDNPYKPSQ 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,378
Number of Sequences: 5004
Number of extensions: 68460
Number of successful extensions: 158
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)