Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0316
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.36 
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              23   1.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.9  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    23   1.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.5  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 304 MVNVHLRVLVKEESVLIHARELA 372
           M+  HL+VL  EE   ++ RE+A
Sbjct: 409 MIPTHLKVLTIEEKPFVYVREIA 431


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
 Frame = +3

Query: 324 RTCQGGKCVDPCPGACGTN---AICSINNHIPSCTC 422
           RTC G   V  C G C +    ++ S       C C
Sbjct: 58  RTCSGDISVTKCEGFCNSQVQPSVASTTGFSKECYC 93


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 39  CTNPCEGSCGFKAECRVQDHIPICSCPVG 125
           C  P E     +A C  QD   ICS P+G
Sbjct: 148 CLTPTER---LEALCWTQDEDVICSTPIG 173


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
 Frame = +3

Query: 324 RTCQGGKCVDPCPGACGTN---AICSINNHIPSCTC 422
           RTC G   V  C G C +    ++ S       C C
Sbjct: 58  RTCSGDISVTKCEGFCNSQVQPSVASTTGFSKECYC 93


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 363 GACGTNAICSIN-NHIPSCTCPPNTSGDPFTF 455
           GA G  A+ +     IP+CTC      DP+ +
Sbjct: 297 GAFGNKALLTPGVTMIPACTCKAVACLDPYVY 328



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 255 VISEIHTYGCRLECSTNGECSPTRTCQGGKCVDP 356
           V+S I  +G +   +      P  TC+   C+DP
Sbjct: 292 VMSMIGAFGNKALLTPGVTMIPACTCKAVACLDP 325


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 39  CTNPCEGSCGFKAECRVQDHIPICSCPVG 125
           C  P E     +A C  QD   ICS P+G
Sbjct: 201 CLTPTER---LEALCWTQDEDIICSTPIG 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,599
Number of Sequences: 438
Number of extensions: 5259
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)