Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0313
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 199 3e-52
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 109 3e-25
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 105 7e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 101 1e-22
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 2e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 7e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 50 3e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 35 0.010
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.074
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.074
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 0.91
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 28 1.2
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.8
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 3.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.7
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 4.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 199 bits (485), Expect = 3e-52
Identities = 92/115 (80%), Positives = 94/115 (81%)
Frame = +3
Query: 255 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 434
SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKM
Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKM 119
Query: 435 TQIMFETFNTPAMYVAIQAXXXXXXXXXXXXXXXDSGDGVFHTVPIY*GYALPHA 599
TQI+FETFN PA YVAIQA DSGDGV HTVPIY GYALPHA
Sbjct: 120 TQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHA 174
Score = 123 bits (297), Expect = 2e-29
Identities = 54/60 (90%), Positives = 59/60 (98%)
Frame = +1
Query: 82 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQAK 261
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQ+K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 109 bits (262), Expect = 3e-25
Identities = 48/112 (42%), Positives = 70/112 (62%)
Frame = +3
Query: 261 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 440
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 441 IMFETFNTPAMYVAIQAXXXXXXXXXXXXXXXDSGDGVFHTVPIY*GYALPH 596
MFE + +YVAIQA DSGDGV H VP+Y L H
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNH 173
Score = 55.6 bits (128), Expect = 5e-09
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +1
Query: 88 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQA 258
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA+A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 105 bits (251), Expect = 7e-24
Identities = 47/114 (41%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Frame = +3
Query: 261 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 437
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 438 QIMFETFNTPAMYVAIQAXXXXXXXXXXXXXXXDSGDGVFHTVPIY*GYALPHA 599
+ +ET N PA+ ++Q + GDG+ H+VPIY G+++P A
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSA 179
Score = 69.3 bits (162), Expect = 4e-13
Identities = 30/52 (57%), Positives = 38/52 (73%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 255
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 101 bits (241), Expect = 1e-22
Identities = 48/114 (42%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Frame = +3
Query: 273 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 452
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 453 TFNTPAMYVAIQA--------XXXXXXXXXXXXXXXDSGDGVFHTVPIY*GYAL 590
+FN +Y+A+QA DSGDGV H +P+ GY +
Sbjct: 149 SFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVI 202
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 249
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.7 bits (148), Expect = 2e-11
Identities = 35/107 (32%), Positives = 48/107 (44%)
Frame = +3
Query: 270 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 449
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 450 ETFNTPAMYVAIQAXXXXXXXXXXXXXXXDSGDGVFHTVPIY*GYAL 590
E+ PA Y+A Q D G IY G+ L
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 186
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.4 bits (135), Expect = 7e-10
Identities = 25/67 (37%), Positives = 41/67 (61%)
Frame = +3
Query: 285 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 464
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 465 PAMYVAI 485
P++ I
Sbjct: 145 PSVAYGI 151
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 100 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 195
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 50.0 bits (114), Expect = 3e-07
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +3
Query: 294 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 473
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 474 YVAIQA 491
Y+ QA
Sbjct: 134 YLTKQA 139
Score = 38.7 bits (86), Expect = 6e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 85 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 255
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.7 bits (76), Expect = 0.010
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 285 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 452
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 453 TFNTPAMYVAIQ 488
P +A +
Sbjct: 172 ECQVPGFTIAYE 183
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.074
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 345 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 488
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.074
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = -3
Query: 266 TSFACASS----PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 102
TS +C +S PT S P+ PT+ P P N S P PL+TT
Sbjct: 389 TSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATT 448
Query: 101 NAATSSS 81
N TS+S
Sbjct: 449 NCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 0.91
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 253 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 164
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = -3
Query: 317 IPVSDDSVFDGVFEGQDTSFACASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 138
+P + +V +TSFA ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 137 PALHIP 120
P L+ P
Sbjct: 123 PQLNSP 128
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.1
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -2
Query: 276 GSGYLFCLCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 103
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 245 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 129
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 145 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 249
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 387 LLTEAPLNPKANREKMTQIMFETFN 461
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 298 PCSMGYLRVRIPLLLVPHLLHKSPSVPYRP 209
P + Y PL VP +L PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,287
Number of Sequences: 5004
Number of extensions: 59082
Number of successful extensions: 171
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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