Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0312
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    29   2.4  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        29   2.4  

>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -1

Query: 580  SPEGVKHTNHRIRLF*C*SCCGTRGVLSLCCLVLYYIVFVLSDYN-PKRPSVRPAL 416
            S  GV  T  R R   C  CC  RG L  CC+  +    +       K+P  +P L
Sbjct: 1828 SDVGVYSTKKRQRGVKCPKCCTRRGCLCKCCIFCFETKCLCGKRKVKKKPFPKPVL 1883


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -1

Query: 580  SPEGVKHTNHRIRLF*C*SCCGTRGVLSLCCLVLYYIVFVLSDYN-PKRPSVRPAL 416
            S  GV  T  R R   C  CC  RG L  CC+  +    +       K+P  +P L
Sbjct: 1828 SDVGVYSTKKRQRGVKCPKCCTRRGCLCKCCIFCFETKCLCGKRKVKKKPFPKPVL 1883


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,031,323
Number of Sequences: 27780
Number of extensions: 200995
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)