Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0311
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    29   0.026
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   2.3  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   2.3  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   2.3  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   5.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.1  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.1  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   9.1  

>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 29.5 bits (63), Expect = 0.026
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +2

Query: 314 VVEQEQQLTLK*QHNLLLHNWSCSAYILDVLYQ*KLLPHC*NECYFAIKAI*GLLWFWEV 493
           V  ++  + L   +N L H      ++LD      +L    N  YF I  +    +  + 
Sbjct: 258 VTSEKSWIALNDDYNRLCH----LCFLLDEKLSYIILTSFLNNFYFIIFQVFESFYLHKA 313

Query: 494 LT-EPVSYLLHLSSWICR*ITICNHGIWI 577
            T E V Y + L   I R +++C +G WI
Sbjct: 314 TTLETVYYFISLGLLILRLVSVCFYGSWI 342


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 337 DTEMTTQSVASQLELQRLHTGRT 405
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 337 DTEMTTQSVASQLELQRLHTGRT 405
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 337 DTEMTTQSVASQLELQRLHTGRT 405
           DT+ T QSV S  +   LH   T
Sbjct: 241 DTKFTEQSVTSTFDFLSLHPAET 263


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 554 ICNHGIWILLRL 589
           +C HGIW   RL
Sbjct: 23  VCYHGIWSTYRL 34


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -2

Query: 250 SGSCVSS*NNAVCVYYTNNCSTGL 179
           +G C    N   C +  N+CS G+
Sbjct: 499 NGRCDEECNTYACEFDGNDCSLGI 522



 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = -2

Query: 262 QLYFSGSCVSS*NNAVCVYYTNNCSTGL 179
           +++  G C    NN  C++   +C   L
Sbjct: 536 EVFMDGICNEDCNNPECLFDGRDCEESL 563


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 349 SFQCQLLFLLHNNTCWMLSSGFFGSFC 269
           +FQ  ++ + HN +C  +  G F S C
Sbjct: 103 TFQTNVV-VKHNGSCLYVPPGIFKSTC 128


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 349 SFQCQLLFLLHNNTCWMLSSGFFGSFC 269
           +FQ  ++ + HN +C  +  G F S C
Sbjct: 103 TFQTNVV-VKHNGSCLYVPPGIFKSTC 128


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 396 WTYCTSRNCCHTAETNAISLSRPYRGC 476
           W Y  SR   H +  +  S +  Y GC
Sbjct: 84  WVYYESRAHIHCSVKSESSQAAKYGGC 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,036
Number of Sequences: 336
Number of extensions: 3627
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)