Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0311
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 106 2e-24
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 56 5e-09
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 30 0.26
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 28 1.4
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 28 1.4
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 25 7.5
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 25 9.9
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 9.9
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 106 bits (255), Expect = 2e-24
Identities = 47/83 (56%), Positives = 62/83 (74%)
Frame = +1
Query: 259 VVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLK 438
+++DKNC+K+H ++ N++C GAGTAADTE T ++S +EL L+T R V TA T+LK
Sbjct: 60 IIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLK 119
Query: 439 RMLFRYQGHIGAALVLGGVDRTG 507
+ LFRYQGHIGA LVLGG D G
Sbjct: 120 QHLFRYQGHIGAYLVLGGYDCKG 142
Score = 74.9 bits (176), Expect = 9e-15
Identities = 33/48 (68%), Positives = 38/48 (79%)
Frame = +2
Query: 107 GFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAT 250
GF FE +QRN L +KGFP PKAT TGTTIVG+I D ++LGADTRAT
Sbjct: 9 GFDFEYYQRNLLLQEKGFPTPKATSTGTTIVGVIAKDCIVLGADTRAT 56
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 510 HIYCIYPHGSVDKLPYATM 566
H++ I HGS DKLPY +
Sbjct: 144 HLFTIAAHGSSDKLPYVAL 162
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 56.0 bits (129), Expect = 5e-09
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Frame = +1
Query: 262 VSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKR 441
++++ K+ L N++CC +G+AADT+ + L + R+ G V TAATL
Sbjct: 50 IANRVTDKLTQLTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASE 109
Query: 442 MLFRYQGHIGAALVLGGVD-RTGLIFTAFILMDL*INYHMQPWDLDPLAAMAVF---EAG 609
M ++ + + A L++ G D +TG + L + H QP + + ++ +A
Sbjct: 110 MCYQNKNMLSAGLIVAGYDEKTG---GDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDAN 166
Query: 610 WKRDMNEEE 636
++ +M +EE
Sbjct: 167 FRENMTQEE 175
Score = 32.7 bits (71), Expect = 0.049
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 179 KTGTTIVGIIYADGVILGADTRAT 250
+ GTTI + Y DGVIL AD+R T
Sbjct: 22 RMGTTITALRYKDGVILAADSRTT 45
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 30.3 bits (65), Expect = 0.26
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 110 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAT 250
FS F N L Q + A A G T VGI DGV+L + + T
Sbjct: 7 FSLTTFSPNGKLVQIEY-ALNAVNAGVTSVGIKATDGVVLATEKKPT 52
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 164 APKATKTGTTIVGIIYADGVILGADTRAT 250
A +A K G+T +G+ D V+LG + R T
Sbjct: 27 AIEAIKLGSTAIGVKTKDAVVLGVEKRLT 55
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 182 TGTTIVGIIYADGVILGADTRATEIQLSR 268
TG++++ + +ADGV++ AD A+ L+R
Sbjct: 42 TGSSVLALKFADGVMIAADNLASYGSLAR 70
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 664 NSISDKLFSLLPHSYHVSNLLQTLP*PQEDPDPMVAYGNLSTDP 533
N + + + S S VS++L T P P + YG TDP
Sbjct: 263 NKVEEAIVSSSAPSSGVSSVLNTPTRPHALSTPRIRYGPQPTDP 306
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 605 ASNTAIAARGSRSHGCIW*FIYRSMRINAVNMRPVLSTPPKT 480
+SN +A R G + + R + ++ +P+L+ PPKT
Sbjct: 605 SSNINTSAPMKRFRGLLKAVLLRRTKNTKIDGKPILTLPPKT 646
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 655 SDKLFSLLPHSYHVSNLLQTLP*PQEDPDPMVAYGNLSTD 536
+D LF + H L+ P +P+ ++ YGNLS +
Sbjct: 356 ADGLFPRVKIEKHYDTPLRATPLQFPEPEYLLMYGNLSNE 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,295
Number of Sequences: 5004
Number of extensions: 58065
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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