Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0311
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 129 2e-30
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 54 1e-07
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 53 2e-07
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 29 3.3
08_01_0827 + 8016704-8017150 29 4.4
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387... 28 5.9
11_06_0394 - 23084485-23084577,23084677-23084802,23085134-230852... 28 7.7
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 28 7.7
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 129 bits (312), Expect = 2e-30
Identities = 67/127 (52%), Positives = 80/127 (62%)
Frame = +1
Query: 259 VVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLK 438
+V+DKNC+KIHY+A N+YCCGAGTAADTE T V+SQL+L R TGR V T+ TLLK
Sbjct: 63 IVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTSLTLLK 122
Query: 439 RMLFRYQGHIGAALVLGGVDRTGLIFTAFILMDL*INYHMQPWDLDPLAAMAVFEAGWKR 618
LF YQGH+ AALVLGGVD TG LAAM+VFE+ +K
Sbjct: 123 SHLFSYQGHVSAALVLGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKYKE 182
Query: 619 DMNEEEG 639
+ EEG
Sbjct: 183 GLTREEG 189
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/52 (61%), Positives = 39/52 (75%)
Frame = +2
Query: 98 PVPGFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATE 253
P GFS++N RNA L +KG P KTGTTIVG+++ DGV+LGADTRATE
Sbjct: 9 PKGGFSYDNCARNAMLVEKGLKMPGFLKTGTTIVGLVFQDGVVLGADTRATE 60
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 54.0 bits (124), Expect = 1e-07
Identities = 35/133 (26%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Frame = +1
Query: 262 VSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKR 441
V+++ KI L N+Y C +G+AADT++ ++ V L + G+ V+ AA L++
Sbjct: 51 VANRASDKITQLTDNVYVCRSGSAADTQVISEYVRYFLHQHTIQLGQPATVKVAANLIRL 110
Query: 442 MLFRYQGHIGAALVLGGVDR--TGLIFTAFILMDL*INYHMQPWDLDPLAAMAVF---EA 606
+ ++ + + A +++GG D+ G IF+ + L QP+ + + ++ +
Sbjct: 111 LAYQNKNMLQAGMIVGGWDKYEGGQIFS----VPLGGTILRQPFAIGGSGSSYLYGLLDH 166
Query: 607 GWKRDMNEEEGKK 645
WK M++EE +K
Sbjct: 167 EWKEGMSQEEAEK 179
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 161 PAPKATKTGTTIVGIIYADGVILGADTRAT 250
P + GTTIVG+ Y GV+L AD+R +
Sbjct: 17 PTSGEHRMGTTIVGVCYDGGVVLAADSRTS 46
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 53.2 bits (122), Expect = 2e-07
Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Frame = +1
Query: 262 VSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKR 441
V+++ KI L N+Y C +G+AADT++ + V L + G+ V+ AA L++
Sbjct: 51 VANRASDKITQLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQPATVKVAANLIRL 110
Query: 442 MLFRYQGHIGAALVLGGVDR--TGLIFTAFILMDL*INYHMQPWDLDPLAAMAVF---EA 606
+ ++ + + A +++GG D+ G IF+ + L QP+ + + ++ +
Sbjct: 111 LAYQNKNMLQAGMIVGGWDKYEGGQIFS----VPLGGTILRQPFAIGGSGSSYLYGLLDH 166
Query: 607 GWKRDMNEEEGKK 645
WK M++EE +K
Sbjct: 167 EWKEGMSQEEAEK 179
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 161 PAPKATKTGTTIVGIIYADGVILGADTRAT 250
P + GTTIVG+ Y GV+L AD+R +
Sbjct: 17 PTSGEHRMGTTIVGVCYDGGVVLAADSRTS 46
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 182 TGTTIVGIIYADGVILGADTRAT 250
TG++I+ + Y DGVI+ +DT A+
Sbjct: 368 TGSSIIALKYKDGVIMASDTGAS 390
>08_01_0827 + 8016704-8017150
Length = 148
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 509 RPVLSTPPKTRAAPIWP**RNSIRFSSVAAVSTGTVRPVCKRCNS 375
RP+L +PP R + R + RF A S +C+ C+S
Sbjct: 10 RPLLPSPPPPRRQEVGAAVRLTTRFPMTTAPSGSATSALCRSCSS 54
>07_03_1019 +
23337543-23337697,23338315-23338384,23338555-23338740,
23339006-23339080,23339161-23339240,23339357-23339483,
23340608-23340667,23341926-23341976,23342048-23342206,
23342528-23342660,23343097-23343166,23343516-23343570
Length = 406
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -3
Query: 666 AIASRTSFFPFFLIHITFPTCFKHCHSRKRIQIPWLH---MVIYLQI 535
+IA + F FLI P +HC +++ +I W H V+Y Q+
Sbjct: 170 SIALGSCFVVVFLIGTEEPGLNQHCQNKRLSRISWTHWFKKVLYYQV 216
>11_06_0394 -
23084485-23084577,23084677-23084802,23085134-23085236,
23085895-23085953,23086418-23086519,23086601-23086714,
23087666-23087746,23088073-23088154,23088504-23088556
Length = 270
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 164 APKATKTGTTIVGIIYADGVILGADTRAT 250
A +A K G+T +G+ DGV+L + R T
Sbjct: 40 AIEAIKLGSTAIGLKTKDGVVLAVEKRVT 68
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 434 SSVAAVSTGTVRPVCKRCNS 375
S V +V+T T+RP+C RC +
Sbjct: 79 SPVESVTTATLRPICFRCTN 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,956,505
Number of Sequences: 37544
Number of extensions: 381809
Number of successful extensions: 912
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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