Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0311
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  30   2.0  
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 30   2.0  
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)                      28   7.9  
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_11379| Best HMM Match : Ion_trans_2 (HMM E-Value=0.066)             28   7.9  

>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 337 DTEMTTQSVASQLELQRLHT--GRTVPVETAATLLKRMLFRYQGH 465
           D +     V S  E+ RLHT  GR+ PVE    LLK+ L + + H
Sbjct: 250 DKKDEDSKVMSSQEVSRLHTPQGRSTPVEPHLQLLKQALKQVKPH 294


>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 176 TKTGTTIVGIIYADGVILGADTRATEIQLSR 268
           T TGT+++GI +  GV++ ADT  +   L+R
Sbjct: 872 TTTGTSVLGIKFNGGVLMAADTLGSYGSLAR 902


>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 645 FFPFFLIHITFPTCFKHCHSRKRI 574
           +FPFF+I +TF  C   C   +RI
Sbjct: 302 WFPFFVIFVTFQYCDTECFGEERI 325


>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 316 CGAGTAADTEMTTQSVASQLELQR 387
           C  GTAA T +T QSVAS ++++R
Sbjct: 637 CKRGTAALTNVTKQSVASVVDIER 660


>SB_8505| Best HMM Match : CitD (HMM E-Value=0.91)
          Length = 909

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = +1

Query: 280 QKIHYLAS-NMYCCGAGTAADTEMTTQSVASQLELQR--LHTGRTVPVETAATLLKRMLF 450
           QK+H +      CC        +         LE+    +H+G  +PVE    L+  +L 
Sbjct: 82  QKLHLVYEITALCCAFNPKNLLQKVVDLCVESLEMYNGDVHSGDGLPVEVTLDLVNYLLK 141

Query: 451 RYQGHIGAALV 483
           +  GH G  ++
Sbjct: 142 QESGHDGVTML 152


>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2905

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 591  HSRKRIQIPWLHMVIYLQIHEDKCSKYETGSVNTSQNQSSPYMALIA 451
            +S   +QI W+H++ YL     +CS    G   +S+++  P    +A
Sbjct: 2774 NSSDHVQITWIHLLGYLSYLRRQCSYISLGV--SSEDEDGPSFGPVA 2818


>SB_11379| Best HMM Match : Ion_trans_2 (HMM E-Value=0.066)
          Length = 102

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 358 IVLSFQCQLLFLLHNNTCWMLSSGFFGSFCPRQLYFSGSCVS 233
           IV  + C+ LF    ++ ++   G +G  CPR +  +G C S
Sbjct: 4   IVPPYHCRTLFFCRVDSTYVFLVGSYGDKCPRTI--AGRCFS 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,507,020
Number of Sequences: 59808
Number of extensions: 440487
Number of successful extensions: 1134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)