Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0311
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical pr...    99   3e-21
AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...    31   0.74 
Z77661-2|CAB01184.4|  265|Caenorhabditis elegans Hypothetical pr...    31   0.98 
Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    29   3.9  
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z82055-2|CAB04844.1|  369|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z99709-4|CAB16855.1|  277|Caenorhabditis elegans Hypothetical
           protein C47B2.4 protein.
          Length = 277

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 50/133 (37%), Positives = 75/133 (56%)
 Frame = +1

Query: 259 VVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLK 438
           +++DK+C+K+H L  ++Y CGAGTAAD +  T+ ++  L L  L+TGR   V TA    K
Sbjct: 71  IIADKHCEKVHKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTGRKARVITALRQAK 130

Query: 439 RMLFRYQGHIGAALVLGGVDRTGLIFTAFILMDL*INYHMQPWDLDPLAAMAVFEAGWKR 618
           + LF YQG+IGA L++GGVD TG            + +          AA+ + E  +K 
Sbjct: 131 QHLFNYQGYIGAYLLIGGVDPTGPHLYMCSANGTTMAFPFTAQGSGSYAAITILERDFKV 190

Query: 619 DMNEEEGKKACPR 657
           DM ++E +K   R
Sbjct: 191 DMTKDEAEKLVQR 203



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/47 (48%), Positives = 31/47 (65%)
 Frame = +2

Query: 110 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRAT 250
           F F N  RN  + + G  APK T TGTTIV + +  G+++GAD+RAT
Sbjct: 21  FDFSNCIRNQAMCKMGGKAPKLTSTGTTIVAVAFKGGLVMGADSRAT 67


>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 155 GFPAPKATKTGTTIVGIIYADGVILGADTRAT 250
           GF   +   TGTT++ + Y  GV++G D+R +
Sbjct: 13  GFYPQEEISTGTTLIAMEYNGGVVVGTDSRTS 44


>Z77661-2|CAB01184.4|  265|Caenorhabditis elegans Hypothetical
           protein F40G12.2 protein.
          Length = 265

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 259 VVSDKNCQKIHYLASNMYCC 318
           V S +NC+K+H+L+SN + C
Sbjct: 210 VKSQENCEKVHFLSSNFWNC 229


>Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical
           protein F25H2.9 protein.
          Length = 248

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +2

Query: 164 APKATKTGTTIVGIIYADGVILGADTRAT 250
           A +A K G+T +GI  ++GV+L A+ R+T
Sbjct: 27  AIEAVKLGSTSIGIKTSEGVLLAAEKRST 55


>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
           protein Y39D8B.1 protein.
          Length = 1372

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 285 FLAVFVRDNCISVALVSAPRITPSAYIIPTIVVPVLVALGAGNPF 151
           F+ V V    +   ++S P I   A + P  +VP++++ G G PF
Sbjct: 689 FVPVLVSPRILGAVILS-PVIMSPAILTPLCMVPIILSPGVGLPF 732


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 202 TNNCSTGLGGFGCRKP 155
           T+ CS GLGGFG  +P
Sbjct: 96  TSQCSPGLGGFGVYRP 111


>Z82055-2|CAB04844.1|  369|Caenorhabditis elegans Hypothetical
           protein T26H2.2 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 603 FKHCHSRKRIQIPWLHMVIYLQIHEDKCSKYETGSVNTS 487
           +  CH+++    P L + I    H+  CS +E   +NTS
Sbjct: 206 YTSCHAKQAKITPGLQLGILPYAHQVLCSNFEHLDINTS 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,445,593
Number of Sequences: 27780
Number of extensions: 335357
Number of successful extensions: 928
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)