Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0310
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   1.8  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    27   1.8  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    26   3.1  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    25   7.2  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   9.5  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    25   9.5  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 403 HLSQHTLLTVLQTIVAYSGHATPAVATYSAPVVAKGSL 516
           HL++ T   VL TI+++ G     +  +S P+++ G++
Sbjct: 191 HLAEATFADVLLTIISFLGVFLKNLRRFSCPILSYGAV 228


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNMLGQ*H 267
           N W+NS+ HN  +      ++R  N+ G+ H
Sbjct: 170 NGWQNSIRHNLSLNKAFMKIERPRNLPGKGH 200


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 421 LLTVLQTIVAYSGHATPAVATYSAPVVAKGSLPL 522
           + T+L    ++ GHA+ AV  Y  P +  GS+PL
Sbjct: 166 MTTILVPKASFIGHASGAVMGYCTPFML-GSIPL 198


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -2

Query: 195 RRQRCGHRERCELSMKRPKTQLD*WF*LPQQEPR*RGCKPREQLRGDHQRGLRLQRTEQR 16
           RRQ  GH +  +L  ++   QL     L Q  P     +PR QL    Q  L ++  + +
Sbjct: 68  RRQLQGHAQSGQLPNQQLLQQLQSNGALQQGTPEPSNTRPRPQLNAQEQTMLLVRHRQLQ 127

Query: 15  SA 10
           +A
Sbjct: 128 TA 129


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 356 SWRNSLGHNRMMRHKRTMVQRRTNMLGQ*HMSMLCSSIRDGRSSN 222
           +W NS+ HN  +      + RR N  G+    ML  S  D    N
Sbjct: 334 AWHNSIRHNLSLNKAFIRIPRRQNEPGKGSFWMLDPSYIDQFEGN 378


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +2

Query: 344 YFSSCFLSIFLLVH---NRSWITIFRNILCSRCS 436
           Y+ + FL + L+ H   + SWI    +++ +RCS
Sbjct: 270 YYDTFFLPMPLISHPLYSSSWIPTLHDLVSTRCS 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,552,660
Number of Sequences: 5004
Number of extensions: 22639
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)