Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0310
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977...    30   1.4  
01_01_0840 - 6557931-6558377                                           28   4.1  
04_03_0203 + 12640502-12641074                                         28   5.5  
05_04_0126 + 18252594-18256922                                         27   7.2  
02_03_0246 - 16807619-16808145,16808208-16808868                       27   7.2  
01_06_1358 - 36637369-36637573,36637643-36638119,36638217-366384...    27   7.2  

>03_06_0505 -
           34397054-34397087,34397127-34397474,34397650-34397757,
           34397847-34398161,34399027-34399442,34399531-34400946
          Length = 878

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 63  RGDHQRGLRLQRTEQRSAWC 4
           RGD QR LRL +  QR +WC
Sbjct: 111 RGDWQRSLRLFKYMQRQSWC 130


>01_01_0840 - 6557931-6558377
          Length = 148

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 195 RRQRCGHRERCEL 157
           RR RCGHR RC L
Sbjct: 54  RRPRCGHRRRCHL 66


>04_03_0203 + 12640502-12641074
          Length = 190

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 494 GAEYVATAGVAWPEYATMVWSTVSRVCCERW 402
           G    A  G    EY  MVW   +++ C RW
Sbjct: 127 GDSCAAPPGRCCGEYTQMVWRATTQIGCARW 157


>05_04_0126 + 18252594-18256922
          Length = 1442

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 353  WRNSLGHNRMMRHKRTMVQ 297
            WR+   HN+ + HKRT VQ
Sbjct: 1398 WRDINAHNKKLIHKRTQVQ 1416


>02_03_0246 - 16807619-16808145,16808208-16808868
          Length = 395

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 539 RCSVSYSGSDPLATTGAEYVATAGVAWPEYATMVWSTVSRVC 414
           R  + Y   D +A T AE+ A+  ++WP         +SR C
Sbjct: 61  RYELFYQPGDAIAFTVAEHTASVSMSWPRMTRGRLPGLSRSC 102


>01_06_1358 -
           36637369-36637573,36637643-36638119,36638217-36638446,
           36638545-36638677,36638772-36638860,36638959-36639029,
           36639116-36639185,36640178-36640300,36640492-36640941
          Length = 615

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 450 CDDGLEHREQSMLRKMVIHERLWTSKKI 367
           C   L H+E   LR+M ++ R W  K+I
Sbjct: 400 CSHNLTHKEADELREMRLNVRHWKEKEI 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,020,752
Number of Sequences: 37544
Number of extensions: 179007
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)