Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0310
(541 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8442| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_22792| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 30 1.1
SB_42384| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_8963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4) 28 5.6
SB_16838| Best HMM Match : TolA (HMM E-Value=2) 27 7.4
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_15403| Best HMM Match : CH (HMM E-Value=0) 27 7.4
SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20) 27 9.8
SB_33825| Best HMM Match : Bacteriocin_II (HMM E-Value=5.5) 27 9.8
SB_10502| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_6254| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_58374| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_57973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_42649| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_33768| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_32535| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_14867| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_14500| Best HMM Match : Vicilin_N (HMM E-Value=5.3) 27 9.8
SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_4070| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_8442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 31.5 bits (68), Expect = 0.46
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNMLGQ*HMSMLCSSIRDGRSSNGLSEDWSS 198
N+WR L ++R RH+R QRR L LC S + + DW +
Sbjct: 6 NTWRILLRNDRKSRHRRIKKQRRYERLAATSQLSLCESYYNSLAVVLQRRDWEN 59
>SB_22792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNMLGQ*HMSMLCSSIRDGRSSNG 219
N+WR L ++R RH+R QRR L LC + + S G
Sbjct: 42 NTWRILLRNDRKSRHRRIKKQRRYERLAATSQLSLCLKLLKTKGSIG 88
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 240 SYAAAQHTHMLLAQHIRTPLHH-RTLMPHHP 329
+Y QHTH + QH+R P H+ R L H+P
Sbjct: 614 TYYMRQHTH-YMRQHLRRPRHYMRQLYTHYP 643
>SB_42384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNMLGQ*HMSMLCSSIR 240
N+WR L ++R RH+R QRR L LC ++
Sbjct: 6 NTWRILLRNDRKSRHRRIKKQRRYERLAATSQLSLCYKLQ 45
>SB_8963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNMLGQ*HMSMLC 252
N+WR L ++R RH+R QRR L LC
Sbjct: 6 NTWRILLRNDRKSRHRRIKKQRRYERLAATSQLSLC 41
>SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)
Length = 330
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 210 RLEQHRRQRCGHRERCELSMKRPKTQ 133
R H R+ C +R+R L+ KRPKT+
Sbjct: 192 RHSHHYRRICRYRQRRPLTPKRPKTR 217
>SB_16838| Best HMM Match : TolA (HMM E-Value=2)
Length = 371
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = -2
Query: 267 YEYAVQQHKRRQEQQWS**RLEQHRRQRCGHRERCELSMKRPKTQ 133
Y Y +QQ ++RQ+QQ + +Q +++R ++ + +R + Q
Sbjct: 50 YNYDIQQQQKRQQQQQ---KRQQQKQKRQQQEQKLQQQQRRQQQQ 91
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 252 QQHKRRQEQQWS**RLEQH-RRQRCGHRERCELSMKRPKTQ 133
Q+H+RRQ Q+ QH RR R H+ R +R K Q
Sbjct: 171 QKHQRRQRQEHQRRHRRQHQRRHRQKHQRRQHQRRERQKQQ 211
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 335 DQDYFSSCFLSIFLLVHNRSWITIFRNILCSRCSRP 442
D+DY + C L S +T+ C CSRP
Sbjct: 1578 DRDYANECVLQARACTWRDSLLTVHNKGPCGACSRP 1613
>SB_42834| Best HMM Match : C2 (HMM E-Value=3.7e-20)
Length = 808
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -2
Query: 252 QQHKRRQEQQWS**RLEQHRRQRCGHRE 169
QQ ++Q+QQ +L+QH++Q+ HR+
Sbjct: 40 QQQMQKQQQQHLQQQLQQHQQQQMQHRD 67
>SB_33825| Best HMM Match : Bacteriocin_II (HMM E-Value=5.5)
Length = 243
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNML 279
N+WR L ++R RH+R QRR L
Sbjct: 208 NTWRILLRNDRKSRHRRIKKQRRYERL 234
>SB_10502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNML 279
N+WR L ++R RH+R QRR L
Sbjct: 6 NTWRILLRNDRKSRHRRIKKQRRYERL 32
>SB_6254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNML 279
N+WR L ++R RH+R QRR L
Sbjct: 6 NTWRILLRNDRKSRHRRIKKQRRYERL 32
>SB_58374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNML 279
N+WR L ++R RH+R QRR L
Sbjct: 6 NTWRILLRNDRKSRHRRIKKQRRYERL 32
>SB_57973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNML 279
N+WR L ++R RH+R QRR L
Sbjct: 6 NTWRILLRNDRKSRHRRIKKQRRYERL 32
>SB_42649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNML 279
N+WR L ++R RH+R QRR L
Sbjct: 24 NTWRILLRNDRKSRHRRIKKQRRYERL 50
>SB_33768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNML 279
N+WR L ++R RH+R QRR L
Sbjct: 6 NTWRILLRNDRKSRHRRIKKQRRYERL 32
>SB_32535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNML 279
N+WR L ++R RH+R QRR L
Sbjct: 6 NTWRILLRNDRKSRHRRIKKQRRYERL 32
>SB_14867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNML 279
N+WR L ++R RH+R QRR L
Sbjct: 6 NTWRILLRNDRKSRHRRIKKQRRYERL 32
>SB_14500| Best HMM Match : Vicilin_N (HMM E-Value=5.3)
Length = 237
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNML 279
N+WR L ++R RH+R QRR L
Sbjct: 202 NTWRILLRNDRKSRHRRIKKQRRYERL 228
>SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 27.1 bits (57), Expect = 9.8
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -2
Query: 252 QQHKRRQEQQWS**RLEQHRRQRCGHRERCELSMKRPKTQLD*WF*LPQQEPR*RGCKPR 73
+Q +R++++Q R Q +RQR HR+R ++ + Q +Q R R + +
Sbjct: 23 RQRQRQRQRQRQRQRQRQRQRQRQRHRQRQRQRQRQRQRQ--------RQRQRQRQRQRQ 74
Query: 72 EQLRGDHQRGLRLQRTEQR 16
Q + QR + QR QR
Sbjct: 75 RQRQRQRQRQRQRQRLRQR 93
>SB_4070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 49
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 359 NSWRNSLGHNRMMRHKRTMVQRRTNML 279
N+WR L ++R RH+R QRR L
Sbjct: 6 NTWRILLRNDRKSRHRRIKKQRRYERL 32
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,519,341
Number of Sequences: 59808
Number of extensions: 206399
Number of successful extensions: 796
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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