Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0310
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-14|CAB60362.1|  109|Caenorhabditis elegans Hypothetical...    30   1.2  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    28   4.9  

>AL110485-14|CAB60362.1|  109|Caenorhabditis elegans Hypothetical
           protein Y46G5A.20 protein.
          Length = 109

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -3

Query: 125 DGFSYHSRSRDSVAVSQGSSSEETTSADYAYSAQSNDQLG 6
           D F  H+  R S + S  SSS  T+S+  + S++S+DQ+G
Sbjct: 28  DSFPRHAPRRRSSS-SSSSSSSSTSSSSSSNSSESDDQVG 66


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 207 LEQHRRQRCGHRERCELSMKRP 142
           +E HRR+RC  ++RC  + + P
Sbjct: 320 VECHRRRRCSRKQRCHTTTQPP 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,846,975
Number of Sequences: 27780
Number of extensions: 139875
Number of successful extensions: 521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)