Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0310
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  

>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 427 TVLQTIVAYSGHATPAVATYSAPVV 501
           T+  T++AY      AV TY+A VV
Sbjct: 136 TITLTLLAYQATKIHAVDTYAASVV 160


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 261  YAVQQHKRRQEQQWS 217
            Y V +HK++ +Q+W+
Sbjct: 1493 YFVVEHKKKNQQEWN 1507


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 255  VQQHKRRQEQQWS**RLEQHRRQRCGHRER 166
            VQQ +++Q+QQ    + +Q ++Q+  H+ R
Sbjct: 1208 VQQQQQQQQQQQQQQQQQQQQQQQQQHQAR 1237



 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 252  QQHKRRQEQQWS**RLEQHRRQRCGHRER 166
            QQ +++Q+QQ    + +Q ++Q+   RER
Sbjct: 1211 QQQQQQQQQQQQQQQQQQQQQQQHQARER 1239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,253
Number of Sequences: 438
Number of extensions: 1831
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)