Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0310
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (...    30   1.1  
At1g74850.1 68414.m08674 pentatricopeptide (PPR) repeat-containi...    29   2.0  
At4g29920.1 68417.m04257 heat shock protein-related contains sim...    28   4.6  
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f...    27   6.1  
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p...    27   6.1  
At4g19970.1 68417.m02924 expressed protein similar to GI:2827651...    27   8.0  
At2g42990.1 68415.m05334 GDSL-motif lipase/hydrolase family prot...    27   8.0  

>At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase
           (CKI1) identical to GB:D87545
          Length = 1122

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 119 FSYHSRSRDSVAVSQGSSSEETTSADYAYSAQSNDQL 9
           FSY + S  SVAV   SSS  ++  DY +  Q+ DQL
Sbjct: 128 FSYIAESNTSVAVFANSSS-NSSRGDYTWYTQTVDQL 163


>At1g74850.1 68414.m08674 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 862

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 63  RGDHQRGLRLQRTEQRSAWC 4
           RGD QR LRL +  QR  WC
Sbjct: 118 RGDWQRSLRLFKYMQRQIWC 137


>At4g29920.1 68417.m04257 heat shock protein-related contains
           similarity to heat shock protein 101 [Triticum aestivum]
           gi|6013196|gb|AAF01280
          Length = 1017

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 115 LKPSVQLCLRSLHTQLTPLTVATSLPT 195
           LK S+ L  R  H+Q+TPL VA++L T
Sbjct: 20  LKQSLTLARRRGHSQVTPLHVASTLLT 46


>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
           family protein similar to pVHL-interacting
           deubiquitinating enzyme 1 type II [Homo sapiens]
           GI:18698435; contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 974

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
 Frame = +3

Query: 438 DHRRILRPRYTRSCD----VLRACC 500
           D R +L PRY RSCD    VL A C
Sbjct: 625 DIRHVLNPRYIRSCDYYFIVLTAFC 649


>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 924

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/29 (31%), Positives = 22/29 (75%)
 Frame = -2

Query: 435 EHREQSMLRKMVIHERLWTSKKILRKQLE 349
           +H+ Q +L ++ +H+RL  + ++++KQ+E
Sbjct: 298 KHKNQGVLTELDVHKRLELTLELVKKQVE 326


>At4g19970.1 68417.m02924 expressed protein similar to GI:2827651,
           GI:7527728, GI:4406788, GI:6063544,  GI:10764853,
           GI:10764852 from [Arabidopsis thaliana]; predicted
           protein PATCHX:E326963
          Length = 715

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 539 RCSVSYSGSDPLATTGAEYVATAGVAWPEYATMVWSTV 426
           RCS  +     L TTG ++      A P+Y  M+W  +
Sbjct: 504 RCSQLHPNCYYLKTTGTDFSGEKLFATPDYLKMMWRRI 541


>At2g42990.1 68415.m05334 GDSL-motif lipase/hydrolase family protein
           similar to  family II lipase EXL3 (GI:15054386), EXL1
           (GI:15054382), EXL2 (GI:15054384) [Arabidopsis
           thaliana]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 350

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 400 HHLSQHTLLTVLQTIVAYSGHATPAVATYSAPVVAKGS 513
           H+LS   L  +L T+V+ +G   PA+  +    V  G+
Sbjct: 4   HYLSPSILCIILTTLVSIAGAKIPAIIVFGDSSVDSGN 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,429,257
Number of Sequences: 28952
Number of extensions: 129926
Number of successful extensions: 424
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)