Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0309
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 216 2e-57
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 128 5e-31
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 120 2e-28
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 112 4e-26
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 71 1e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 68 9e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 57 2e-09
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 48 1e-06
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.074
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.30
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 28 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.8
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 2.8
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 3.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.7
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 4.9
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 25 6.4
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 8.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 216 bits (528), Expect = 2e-57
Identities = 99/116 (85%), Positives = 104/116 (89%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QI+FETFN PA YVAIQAVLSLYA G VLDS DGV HTVPIYEGYALPHAI+
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIM 176
Score = 121 bits (291), Expect = 9e-29
Identities = 53/58 (91%), Positives = 57/58 (98%)
Frame = +2
Query: 74 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQ
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQ 59
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 128 bits (310), Expect = 5e-31
Identities = 56/114 (49%), Positives = 81/114 (71%)
Frame = +1
Query: 253 KGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 432
+ +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 433 IMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAI 594
MFE + +YVAIQAVLSLYA GL V+DS DGV H VP+YE L H +
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLV 175
Score = 54.0 bits (124), Expect = 2e-08
Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +2
Query: 80 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQ 247
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA+
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAE 59
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 120 bits (288), Expect = 2e-28
Identities = 53/115 (46%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Frame = +1
Query: 253 KGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 429
+G+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAI 594
+ +ET N PA+ ++Q VL+LYA VL+ DG+ H+VPIY+G+++P AI
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
Score = 69.3 bits (162), Expect = 4e-13
Identities = 30/52 (57%), Positives = 38/52 (73%)
Frame = +2
Query: 92 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 112 bits (269), Expect = 4e-26
Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
Frame = +1
Query: 265 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 444
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 445 TFNTPAMYVAIQAVLSLYAFGLPPVF--------VLDSRDGVFHTVPIYEGYALPHAI 594
+FN +Y+A+QAVL+L A V+DS DGV H +P+ EGY + +I
Sbjct: 149 SFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSI 206
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 92 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 241
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 70.9 bits (166), Expect = 1e-13
Identities = 36/107 (33%), Positives = 54/107 (50%)
Frame = +1
Query: 262 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 441
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 442 ETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYAL 582
E+ PA Y+A Q + +A G ++D IY+G+ L
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 178
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 68.1 bits (159), Expect = 9e-13
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Frame = +1
Query: 277 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 456
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 457 PAMYVAIQAVLSLYAFGLPPV--FVLDSRDGVFHTVPIYEG 573
P++ I + S Y P VL+ + H +P+ G
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 92 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 187
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 56.8 bits (131), Expect = 2e-09
Identities = 26/103 (25%), Positives = 50/103 (48%)
Frame = +1
Query: 286 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 465
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 466 YVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAI 594
Y+ QAV +A ++D P+ +G + I
Sbjct: 134 YLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGI 176
Score = 38.7 bits (86), Expect = 6e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 47.6 bits (108), Expect = 1e-06
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = +1
Query: 277 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 444
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 445 TFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEG 573
P +A + ++ LYA G+ V+D PI +G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.074
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 337 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 480
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.30
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 234 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 73
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 506 PNAYSESTAWMATYMAGVLNVSNMI-WVIFSLLAL 405
PN +E W++ Y+ G + +++ W IF+ L L
Sbjct: 251 PNFLAEQLIWLSFYLFGAIASESLLNWTIFAWLGL 285
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 237 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 121
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 245 VPHLLHKSPSVPYRPSRPDGGAFPRSRET 159
+ L+ K+PS PY SRP A S T
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPT 334
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 137 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 241
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 379 LLTEAPLNPKANREKMTQIMFETFN 453
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 263 RIPFCSVPHLLHKSPSVPYRPSRPDGGAFPRSRETLREEHHLLRSR 126
R PF S+ H HK YRPSR + + R + RSR
Sbjct: 176 RFPFESL-HKNHKHYENSYRPSRSQNNSHYNDKSFHRSRYSRARSR 220
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 552 VEDTVAGVQHEYRW*TERVQREHGLDGDVHGG 457
VE + + YRW R+Q+EH L +H G
Sbjct: 200 VELEAQEINYVYRW---RLQQEHALKARIHKG 228
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 290 PCSMGYLRVRIPFCSVPHLLHKSPSVPYRP 201
P + Y P +VP +L PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,273
Number of Sequences: 5004
Number of extensions: 59393
Number of successful extensions: 187
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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