Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0309
(603 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 225 2e-59
SB_56| Best HMM Match : Actin (HMM E-Value=0) 225 2e-59
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 225 2e-59
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 225 3e-59
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 206 8e-54
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 2e-31
SB_54| Best HMM Match : Actin (HMM E-Value=0) 126 1e-29
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 1e-28
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 114 6e-26
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 87 1e-17
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 84 1e-16
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 6e-07
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 46 2e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.058
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 33 0.24
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 31 0.54
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.54
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_16971| Best HMM Match : zf-C2H2 (HMM E-Value=5.8e-36) 29 3.8
SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6) 29 3.8
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015) 28 5.1
SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59) 28 6.7
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_24944| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19) 27 8.8
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 8.8
SB_18661| Best HMM Match : Keratin_B2 (HMM E-Value=0.66) 27 8.8
SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 225 bits (551), Expect = 2e-59
Identities = 104/116 (89%), Positives = 108/116 (93%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETFN+PAMYVAIQAVLSLYA G V+DS DGV HTVPIYEGYALPHAIL
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIL 176
Score = 122 bits (293), Expect = 3e-28
Identities = 55/58 (94%), Positives = 58/58 (100%)
Frame = +2
Query: 74 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 59
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 225 bits (551), Expect = 2e-59
Identities = 104/116 (89%), Positives = 108/116 (93%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETFN+PAMYVAIQAVLSLYA G V+DS DGV HTVPIYEGYALPHAIL
Sbjct: 121 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIL 176
Score = 123 bits (296), Expect = 1e-28
Identities = 56/58 (96%), Positives = 58/58 (100%)
Frame = +2
Query: 74 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 59
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 225 bits (551), Expect = 2e-59
Identities = 104/116 (89%), Positives = 108/116 (93%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETFN+PAMYVAIQAVLSLYA G V+DS DGV HTVPIYEGYALPHAIL
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIL 177
Score = 129 bits (311), Expect = 2e-30
Identities = 58/60 (96%), Positives = 60/60 (100%)
Frame = +2
Query: 68 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 225 bits (549), Expect = 3e-59
Identities = 103/116 (88%), Positives = 108/116 (93%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
QIMFETFN+PAMYVAIQAVLSLYA G V+DS DGV HTVPIYEGYALPHAI+
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAII 177
Score = 124 bits (300), Expect = 4e-29
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +2
Query: 68 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 206 bits (504), Expect = 8e-54
Identities = 97/112 (86%), Positives = 102/112 (91%), Gaps = 2/112 (1%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 429
++GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 430 QIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYE--GYA 579
QIMFETFN+PAMYVAIQAVLSLYA G V+DS DGV HTVPIYE GY+
Sbjct: 122 QIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEERGYS 173
Score = 124 bits (300), Expect = 4e-29
Identities = 55/60 (91%), Positives = 59/60 (98%)
Frame = +2
Query: 68 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 132 bits (320), Expect = 2e-31
Identities = 59/111 (53%), Positives = 80/111 (72%), Gaps = 1/111 (0%)
Frame = +1
Query: 259 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 435
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 436 MFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPH 588
MFE + +Y+AIQAVL+LYA GL V+DS DGV H P+YEG+ALPH
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPH 177
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 86 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEA 244
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEA 61
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 126 bits (305), Expect = 1e-29
Identities = 58/91 (63%), Positives = 70/91 (76%)
Frame = +1
Query: 319 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 498
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 499 AFGLPPVFVLDSRDGVFHTVPIYEGYALPHA 591
A G V D DGV HTVP+Y+GY LPHA
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHA 2219
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 92 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 193
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 123 bits (296), Expect = 1e-28
Identities = 55/58 (94%), Positives = 58/58 (100%)
Frame = +2
Query: 74 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 247
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 59
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +1
Query: 412 NREKMTQIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHA 591
N + M +IMFETFN+PAMYVAIQAVLSLYA G V+DS DGV HTVPIYEGYALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 592 IL 597
I+
Sbjct: 138 II 139
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +1
Query: 250 QKGILTLKYPIEHGIVTNWDDMEKIWHHTF 339
++GILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 114 bits (274), Expect = 6e-26
Identities = 49/77 (63%), Positives = 64/77 (83%)
Frame = +1
Query: 367 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGV 546
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA G VLD+ DGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 547 FHTVPIYEGYALPHAIL 597
H+VPIYEG+A+PH+I+
Sbjct: 186 SHSVPIYEGFAMPHSIM 202
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 86.6 bits (205), Expect = 1e-17
Identities = 42/55 (76%), Positives = 44/55 (80%)
Frame = +1
Query: 433 IMFETFNTPAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
IMFE FN+PA+YVAIQAVLSLYA G V DS DGV H VPIYEGYALPHAIL
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAIL 55
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/107 (35%), Positives = 64/107 (59%)
Frame = +1
Query: 277 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 456
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 457 PAMYVAIQAVLSLYAFGLPPVFVLDSRDGVFHTVPIYEGYALPHAIL 597
PA ++ +VL+ +A G V+DS VP+++GY L AI+
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIV 109
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 77 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 193
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 62 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 208
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 46.0 bits (104), Expect = 2e-05
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 271 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 384
K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 299 KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.7 bits (76), Expect = 0.058
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -3
Query: 190 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 74
MA + D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 32.7 bits (71), Expect = 0.24
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 6/112 (5%)
Frame = +1
Query: 277 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 456
P + G + NWD ++IW +TF E + M +I+FE +N
Sbjct: 292 PFQKGFLVNWDVEKQIWDYTFGKE--------------------GLEDAMDEILFEEYNF 331
Query: 457 PAMYVAIQAVLSLY------AFGLPPVFVLDSRDGVFHTVPIYEGYALPHAI 594
A+ A LS Y P V+D+ H VP++ G + A+
Sbjct: 332 KALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKVIKKAV 383
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 80 EVAALVVDNGSGMCKAGFAGDDAPRAV 160
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 268 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 420
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 165 GNTARGASSPAKPALHIPEPLSTT 94
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 31.5 bits (68), Expect = 0.54
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 523 VLDSRDGVFHTVPIYEGYALPHAI 594
V+DS DGV H +P+ EGY + I
Sbjct: 65 VIDSGDGVTHVIPVAEGYVIGSCI 88
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 165 GNTARGASSPAKPALHIPEPLSTT 94
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 165 GNTARGASSPAKPALHIPEPLSTT 94
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 393 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 485
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 443 KHSTRPPCTSPSK-PCSRCTRSVYHRYSCWTPATVS-STPC 559
+H PP +S S PC T HR+ PAT S TPC
Sbjct: 10 RHHPPPPASSSSPTPCYGITPHPLHRHHLPPPATASPPTPC 50
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 446 HSTRPPCTSPSKPCSRCTRSVYHRYSC-WTPATVSSTPCPSTRDT 577
HST ++PS P + CT S S TP+T S+ PST T
Sbjct: 63 HSTPSAPSTPSTPSTPCTPSTPSTPSTPSTPSTPSTPSAPSTPST 107
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +3
Query: 396 PQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSTTGIRAGLPRRCLPHRAHLRGI 575
PQ G EDD D+V+ ++ +RH + +V+ S RA RR R +R
Sbjct: 647 PQVDGANDEDDTDNVQLESRSQGQQRHSNSKSSVQSSSELVKRARTTRRLGVSRVKIRVS 706
Query: 576 RTSPRHS 596
+T + S
Sbjct: 707 QTHSQPS 713
>SB_16971| Best HMM Match : zf-C2H2 (HMM E-Value=5.8e-36)
Length = 477
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = +2
Query: 461 PCTSPSKPCSRCTRSVYHRYSCWTPATVSSTPCPSTRDTHFPTP 592
P PS PC RC + + Y + + T C D FP P
Sbjct: 237 PLDGPSFPCERCGKLFAYEY--YRDKHLKYTRCLDNGDRRFPCP 278
>SB_37483| Best HMM Match : Drf_FH1 (HMM E-Value=6.6)
Length = 237
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 446 HSTRPPCTSPSKPCSRCTRSVYHRYSCWTPA-TVSSTPCPSTRDTHFPTPFLR 601
H+T +P P S S Y+ +TPA TV P +++ T P PF +
Sbjct: 69 HTTAASQPAPYTPASGQPASYTPAYTPYTPASTVGRMPPTTSQSTPSPAPFFQ 121
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +2
Query: 461 PCTSPSKPCSRCTRSVYHRYSCWTPATVSSTPCPSTRDTHFP 586
PCT PC+ RY TP T TPC T +P
Sbjct: 667 PCTERYSPCTERYTPCTERY---TPCTERYTPCNDLSVTPYP 705
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 165 GNTARGASSPAKPALHIPEPLSTT 94
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 165 GNTARGASSPAKPALHIPEPLSTT 94
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_717| Best HMM Match : Glyco_hydro_63 (HMM E-Value=0.00015)
Length = 1052
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 530 SSTNTGGRPNAYSESTAWMATYMAGVLNVS 441
S T GG ++ TAWMA Y +LN+S
Sbjct: 662 SKTLPGGGRLCQADGTAWMALYCIVMLNIS 691
>SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59)
Length = 764
Score = 27.9 bits (59), Expect = 6.7
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 426 DPDHV-RNIQHARHVRRHPSRALAVRVRSTTGIRAGLPRRCLPHRAHLRGIRTSPRH 593
DP HV R +RHVRR PS + VR R T R + R L R H+R RH
Sbjct: 224 DPRHVKRKTLDSRHVRRKPSDSRHVR-RKTLDSR-HVRRNTLDSR-HVRCNTLDSRH 277
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 242 PHLLHKSPSVPYRPSRPDGGAFPRSRETLREEHHLLRSRPCTYRSHCLLPTRQLLRR 72
P L +P + RPS + S + LL RP TYR+ LP+ LL +
Sbjct: 131 PLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 461 PCTS-PSKPCSRCTRSVYHRYSCWTPATVSSTPC 559
PC+S P + CT + RYSC P S C
Sbjct: 1307 PCSSNPCQNGGTCTEAAAGRYSCACPVRFSGEHC 1340
>SB_24944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 226 RVLLSHTDHHALMAGPSHDRGKHCARSIISCEAGLAHTGAIVYY 95
R++ S T H + G H G H ++ EAGL I+ +
Sbjct: 37 RLVFSATIEHEYLGGRYHSIGAHISQETSRHEAGLTQISRIIRF 80
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 180 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 70
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 399 QPQGQQRE-DDPDHVRNIQHARHVRRHPSRALAVRVRSTTGIRAG 530
Q QG Q + + P V + H R RHP+ L + GI G
Sbjct: 2325 QQQGVQMQVNQPQGVMEVSHQRFALRHPAPGLPPPPQQVPGILPG 2369
>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
Length = 1211
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 446 HSTRP-PCTSPSKPCSRCTRSVYHRYSCWTPATVSSTPC 559
H+T P P T PS P C + C+T T+S PC
Sbjct: 665 HTTHPSPATHPS-PSQPCPATHLSPKPCFTFVTLSPKPC 702
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 185 GAFPRSRETLREEHHLLRSRPCTYRS 108
G +P S++T R E + +RPCT S
Sbjct: 832 GCYPWSKQTFRHEGPPISARPCTAMS 857
>SB_18661| Best HMM Match : Keratin_B2 (HMM E-Value=0.66)
Length = 184
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Frame = +2
Query: 461 PCTSP------SKPCSRCTRSVYHRYSCWTPATVSSTPCPSTRDTH 580
PCT+P PC+ + Y ++ C TP + P T TH
Sbjct: 48 PCTTPMHNTHAQHPCTTPMHNTYAQHPCTTPMHNTHAQHPCTTPTH 93
>SB_5146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2077
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Frame = +2
Query: 446 HSTRPPCTSPSKPCSR-CTRSVYH---RYSCWTPATVSSTPC 559
HS + PCT PC + C H + C P + PC
Sbjct: 1933 HSCQEPCTKNCPPCQKQCENKCEHSKCKNRCGEPCVPCAEPC 1974
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,809,896
Number of Sequences: 59808
Number of extensions: 532366
Number of successful extensions: 1960
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1953
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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